1 Response_reg#1
5-115 aa · 111 aa · 21.9% of protein
Raw token
Response_reg:5:3.21e-31:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4443_RS17520
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_013300255
ClassRRTypeunclassifiedLength507 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300255#G4443_RS17520Stable P2CS identifier used across views.
GenomeGCF_013300255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 507 aa (37.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
412-454 aa · 43 aa · 8.5% of protein
Raw token
HTH_AraC:412:0.00000119:454:43:423 HTH_AraC#3
468-503 aa · 36 aa · 7.1% of protein
Raw token
HTH_AraC:468:0.0000000698:503:36:42- Raw architecture: Response_reg:5:3.21e-31:115:111:111#HTH_AraC:412:0.00000119:454:43:42#HTH_AraC:468:0.0000000698:503:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300255::NZ_JAAINW010000017.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5853-9108Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4443_11495RefSeq proteinWP_173815418.1
Context group ID
GCF_013300255::NZ_JAAINW010000017.1::G00012Context members
G4443_RS17520G4443_RS11465
Partner locus tags
G4443_RS17520G4443_RS11465
Partner old locus tags
G4443_11495G4443_11500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815418.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4443_RS17520Primary locus identifier stored in the genes table.
Old locus tagG4443_11495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINW010000017.1Sequence record reported by the local genomic context database.
Genomic interval5 853-7 376 nt1 524 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 853-9 108 ntGCF_013300255::NZ_JAAINW010000017.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300255::NZ_JAAINW010000017.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINW010000017.1All displayed genes belong to this local TCS context.
Neighborhood span5 853-9 108 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 853 nt9 108 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4443_RS17520GCF_013300255#G4443_RS17520
RRunclassifiedCurrent focus
5 853-7 376 nt · Forward (+)
G4443_RS11465GCF_013300255#G4443_RS11465
HKClassic
7 378-9 108 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS17520The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0150387
Simplified PFAM architecture for RROC_0150387
PFAM domain coverage: 189 / 507 aa (37.3%)
1 aa507 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-114] | HTH_18[426-504]
- Domain count: 2
- Matched identifier: RROC_0150387
- Positioned domains: Response_reg 5-114 ; HTH_18 426-504
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS17520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300255
AssemblyASM1330025v1 · Contighaploid
Genome composition3 644 469 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key