1 Response_reg#1
3-115 aa · 113 aa · 22.1% of protein
Raw token
Response_reg:3:5.14e-30:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4418_RS08030
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_013299885
ClassRRTypeunclassifiedLength512 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299885#G4418_RS08030Stable P2CS identifier used across views.
GenomeGCF_013299885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length512 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage188 / 512 aa (36.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa512 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
418-457 aa · 40 aa · 7.8% of protein
Raw token
HTH_AraC:418:0.000000846:457:40:423 HTH_AraC#3
475-509 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:475:0.0000000393:509:35:42- Raw architecture: Response_reg:3:5.14e-30:115:113:111#HTH_AraC:418:0.000000846:457:40:42#HTH_AraC:475:0.0000000393:509:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299885::NZ_JAAIMT010000012.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67152-70504Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4418_08015RefSeq proteinWP_118052186.1
Context group ID
GCF_013299885::NZ_JAAIMT010000012.1::G00009Context members
G4418_RS08025G4418_RS08030
Partner locus tags
G4418_RS08025G4418_RS08030
Partner old locus tags
G4418_08010G4418_08015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118052186.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1AZK0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1AZK0_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4418_RS08030Primary locus identifier stored in the genes table.
Old locus tagG4418_08015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMT010000012.1Sequence record reported by the local genomic context database.
Genomic interval68 966-70 504 nt1 539 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 152-70 504 ntGCF_013299885::NZ_JAAIMT010000012.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299885::NZ_JAAIMT010000012.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMT010000012.1All displayed genes belong to this local TCS context.
Neighborhood span67 152-70 504 nt3 353 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 152 nt70 504 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4418_RS08025GCF_013299885#G4418_RS08025
HKClassic
67 152-68 969 nt · Forward (+)
G4418_RS08030GCF_013299885#G4418_RS08030
RRunclassifiedCurrent focus
68 966-70 504 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299885#G4418_RS08030The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0143743
Simplified PFAM architecture for RROC_0143743
PFAM domain coverage: 189 / 512 aa (36.9%)
1 aa512 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[434-509]
- Domain count: 2
- Matched identifier: RROC_0143743
- Positioned domains: Response_reg 3-115 ; HTH_18 434-509
Cluster members and taxonomy
Representative gene: GCF_013299885#G4418_RS08030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013299885
AssemblyASM1329988v1 · Contighaploid
Genome composition3 830 237 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key