1 Response_reg#1
5-114 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:5:1.63e-31:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4418_RS01145
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_013299885
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299885#G4418_RS01145Stable P2CS identifier used across views.
GenomeGCF_013299885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-219 aa · 72 aa · 32.3% of protein
Raw token
Trans_reg_C:148:1.76e-27:219:77:77- Raw architecture: Response_reg:5:1.63e-31:114:111:111#Trans_reg_C:148:1.76e-27:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299885::NZ_JAAIMT010000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20073-22101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4418_01145RefSeq proteinWP_173878378.1
Context group ID
GCF_013299885::NZ_JAAIMT010000002.1::G00025Context members
G4418_RS01140G4418_RS01145
Partner locus tags
G4418_RS01140G4418_RS01145
Partner old locus tags
G4418_01140G4418_01145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173878378.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1AX36Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1AX36_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4418_RS01145Primary locus identifier stored in the genes table.
Old locus tagG4418_01145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMT010000002.1Sequence record reported by the local genomic context database.
Genomic interval21 430-22 101 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 073-22 101 ntGCF_013299885::NZ_JAAIMT010000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299885::NZ_JAAIMT010000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMT010000002.1All displayed genes belong to this local TCS context.
Neighborhood span20 073-22 101 nt2 029 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 073 nt22 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4418_RS01140GCF_013299885#G4418_RS01140
HKClassic
20 073-21 446 nt · Reverse (-)
G4418_RS01145GCF_013299885#G4418_RS01145
RROmpRCurrent focus
21 430-22 101 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299885#G4418_RS01145The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1606178
Simplified PFAM architecture for RROC_1606178
PFAM domain coverage: 179 / 223 aa (80.3%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[149-219]
- Domain count: 2
- Matched identifier: RROC_1606178
- Positioned domains: Response_reg 5-112 ; Trans_reg_C 149-219
Cluster members and taxonomy
Representative gene: GCF_013299885#G4418_RS01145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013299885
AssemblyASM1329988v1 · Contighaploid
Genome composition3 830 237 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key