1 HAMP#1
288-357 aa · 70 aa · 12.0% of protein
Raw token
HAMP:288:0.00000000217:357:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4418_RS05050
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013299885
ClassHKTypeClassicLength583 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299885#G4418_RS05050Stable P2CS identifier used across views.
GenomeGCF_013299885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length583 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 583 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa583 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-452 aa · 81 aa · 13.9% of protein
Raw token
His_kinase:372:4.08e-22:452:81:803 HATPase_c#3
475-575 aa · 101 aa · 17.3% of protein
Raw token
HATPase_c:475:0.000000000000112:575:105:109- Raw architecture: HAMP:288:0.00000000217:357:70:69#His_kinase:372:4.08e-22:452:81:80#HATPase_c:475:0.000000000000112:575:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299885::NZ_JAAIMT010000007.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27883-30692Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4418_05050RefSeq proteinWP_173878776.1
Context group ID
GCF_013299885::NZ_JAAIMT010000007.1::G00057Context members
G4418_RS05045G4418_RS05050
Partner locus tags
G4418_RS05045G4418_RS05050
Partner old locus tags
G4418_05045G4418_05050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173878776.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1EPH2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1EPH2_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4418_RS05050Primary locus identifier stored in the genes table.
Old locus tagG4418_05050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMT010000007.1Sequence record reported by the local genomic context database.
Genomic interval28 941-30 692 nt1 752 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 883-30 692 ntGCF_013299885::NZ_JAAIMT010000007.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299885::NZ_JAAIMT010000007.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMT010000007.1All displayed genes belong to this local TCS context.
Neighborhood span27 883-30 692 nt2 810 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 883 nt30 692 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4418_RS05045GCF_013299885#G4418_RS05045
RRunclassified
27 883-28 953 nt · Reverse (-)
G4418_RS05050GCF_013299885#G4418_RS05050
HKClassicCurrent focus
28 941-30 692 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299885#G4418_RS05050The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1149149
Simplified PFAM architecture for HKOC_1149149
PFAM domain coverage: 183 / 583 aa (31.4%)
1 aa583 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[372-451] | HATPase_c[472-574]
- Domain count: 2
- Matched identifier: HKOC_1149149
- Positioned domains: His_kinase 372-451 ; HATPase_c 472-574
Cluster members and taxonomy
Representative gene: GCF_013299885#G4418_RS05050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013299885
AssemblyASM1329988v1 · Contighaploid
Genome composition3 830 237 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key