1 Response_reg#1
4-114 aa · 111 aa · 50.7% of protein
Raw token
Response_reg:4:0.000000000000103:114:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4465_RS14025
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_013299825
ClassRRTypeLytTRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013299825#G4465_RS14025Stable P2CS identifier used across views.
GenomeGCF_013299825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 219 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-203 aa · 63 aa · 28.8% of protein
Raw token
LytTR:141:1.61e-18:203:63:98- Raw architecture: Response_reg:4:0.000000000000103:114:115:111#LytTR:141:1.61e-18:203:63:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013299825::NZ_JAAIMS010000040.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span10382-11041Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4465_13975RefSeq proteinWP_243840596.1
Context group ID
GCF_013299825::NZ_JAAIMS010000040.1::G00031Context members
G4465_RS14025
Partner locus tags
G4465_RS14025
Partner old locus tags
G4465_13975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243840596.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4465_RS14025Primary locus identifier stored in the genes table.
Old locus tagG4465_13975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMS010000040.1Sequence record reported by the local genomic context database.
Genomic interval10 382-11 041 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 382-11 041 ntGCF_013299825::NZ_JAAIMS010000040.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299825::NZ_JAAIMS010000040.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMS010000040.1All displayed genes belong to this local TCS context.
Neighborhood span10 382-11 041 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 382 nt11 041 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4465_RS14025GCF_013299825#G4465_RS14025
RRLytTRCurrent focus
10 382-11 041 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299825#G4465_RS14025The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1782451
Simplified PFAM architecture for RROC_1782451
PFAM domain coverage: 175 / 219 aa (79.9%)
1 aa219 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[141-203]
- Domain count: 2
- Matched identifier: RROC_1782451
- Positioned domains: Response_reg 4-115 ; LytTR 141-203
Cluster members and taxonomy
Representative gene: GCF_013299825#G4465_RS14025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013299825
AssemblyASM1329982v1 · Contighaploid
Genome composition3 191 344 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key