1 Response_reg#1
4-116 aa · 113 aa · 22.3% of protein
Raw token
Response_reg:4:1.33e-31:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4465_RS07610
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_013299825
ClassRRTypeunclassifiedLength507 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299825#G4465_RS07610Stable P2CS identifier used across views.
GenomeGCF_013299825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 507 aa (37.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
413-453 aa · 41 aa · 8.1% of protein
Raw token
HTH_AraC:413:0.00000000172:453:41:423 HTH_AraC#3
468-503 aa · 36 aa · 7.1% of protein
Raw token
HTH_AraC:468:0.00000000443:503:36:42- Raw architecture: Response_reg:4:1.33e-31:116:113:111#HTH_AraC:413:0.00000000172:453:41:42#HTH_AraC:468:0.00000000443:503:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299825::NZ_JAAIMS010000012.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9446-12899Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4465_07590RefSeq proteinWP_118053101.1
Context group ID
GCF_013299825::NZ_JAAIMS010000012.1::G00004Context members
G4465_RS07605G4465_RS07610
Partner locus tags
G4465_RS07605G4465_RS07610
Partner old locus tags
G4465_07585G4465_07590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118053101.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4465_RS07610Primary locus identifier stored in the genes table.
Old locus tagG4465_07590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMS010000012.1Sequence record reported by the local genomic context database.
Genomic interval11 376-12 899 nt1 524 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 446-12 899 ntGCF_013299825::NZ_JAAIMS010000012.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299825::NZ_JAAIMS010000012.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMS010000012.1All displayed genes belong to this local TCS context.
Neighborhood span9 446-12 899 nt3 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 446 nt12 899 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4465_RS07605GCF_013299825#G4465_RS07605
HKClassic
9 446-11 401 nt · Forward (+)
G4465_RS07610GCF_013299825#G4465_RS07610
RRunclassifiedCurrent focus
11 376-12 899 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299825#G4465_RS07610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0150385
Simplified PFAM architecture for RROC_0150385
PFAM domain coverage: 190 / 507 aa (37.5%)
1 aa507 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[426-504]
- Domain count: 2
- Matched identifier: RROC_0150385
- Positioned domains: Response_reg 4-114 ; HTH_18 426-504
Cluster members and taxonomy
Representative gene: GCF_013299825#G4465_RS07610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013299825
AssemblyASM1329982v1 · Contighaploid
Genome composition3 191 344 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key