1 HisKA#1
197-260 aa · 64 aa · 15.2% of protein
Raw token
HisKA:197:0.0000000661:260:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4465_RS03925
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013299825
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299825#G4465_RS03925Stable P2CS identifier used across views.
GenomeGCF_013299825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 421 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-418 aa · 110 aa · 26.1% of protein
Raw token
HATPase_c:309:2.47e-30:418:110:109- Raw architecture: HisKA:197:0.0000000661:260:64:64#HATPase_c:309:2.47e-30:418:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299825::NZ_JAAIMS010000005.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40632-42562Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4465_03920RefSeq proteinWP_173863937.1
Context group ID
GCF_013299825::NZ_JAAIMS010000005.1::G00042Context members
G4465_RS03920G4465_RS03925
Partner locus tags
G4465_RS03920G4465_RS03925
Partner old locus tags
G4465_03915G4465_03920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173863937.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4465_RS03925Primary locus identifier stored in the genes table.
Old locus tagG4465_03920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMS010000005.1Sequence record reported by the local genomic context database.
Genomic interval41 297-42 562 nt1 266 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 632-42 562 ntGCF_013299825::NZ_JAAIMS010000005.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299825::NZ_JAAIMS010000005.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMS010000005.1All displayed genes belong to this local TCS context.
Neighborhood span40 632-42 562 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 632 nt42 562 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4465_RS03920GCF_013299825#G4465_RS03920
RROmpR
40 632-41 321 nt · Forward (+)
G4465_RS03925GCF_013299825#G4465_RS03925
HKClassicCurrent focus
41 297-42 562 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299825#G4465_RS03925The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2259715
Simplified PFAM architecture for HKOC_2259715
PFAM domain coverage: 175 / 421 aa (41.6%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[197-260] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2259715
- Positioned domains: HisKA 197-260 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_013299825#G4465_RS03925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013299825
AssemblyASM1329982v1 · Contighaploid
Genome composition3 191 344 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key