1 HAMP#1
230-298 aa · 69 aa · 13.2% of protein
Raw token
HAMP:230:0.000000000000913:298:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4465_RS02725
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013299825
ClassHKTypeClassicLength522 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299825#G4465_RS02725Stable P2CS identifier used across views.
GenomeGCF_013299825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length522 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 522 aa (48.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa522 aa
Domain-by-domain annotation3 items
2 His_kinase#2
315-393 aa · 79 aa · 15.1% of protein
Raw token
His_kinase:315:3.36e-27:393:79:803 HATPase_c#3
405-510 aa · 106 aa · 20.3% of protein
Raw token
HATPase_c:405:0.00000000000166:510:115:109- Raw architecture: HAMP:230:0.000000000000913:298:69:69#His_kinase:315:3.36e-27:393:79:80#HATPase_c:405:0.00000000000166:510:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299825::NZ_JAAIMS010000003.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span92433-95710Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4465_02730RefSeq proteinWP_173863858.1
Context group ID
GCF_013299825::NZ_JAAIMS010000003.1::G00028Context members
G4465_RS02720G4465_RS02725
Partner locus tags
G4465_RS02720G4465_RS02725
Partner old locus tags
G4465_02725G4465_02730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173863858.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4465_RS02725Primary locus identifier stored in the genes table.
Old locus tagG4465_02730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMS010000003.1Sequence record reported by the local genomic context database.
Genomic interval94 142-95 710 nt1 569 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span92 433-95 710 ntGCF_013299825::NZ_JAAIMS010000003.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299825::NZ_JAAIMS010000003.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMS010000003.1All displayed genes belong to this local TCS context.
Neighborhood span92 433-95 710 nt3 278 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 433 nt95 710 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4465_RS02720GCF_013299825#G4465_RS02720
RRunclassified
92 433-93 986 nt · Forward (+)
G4465_RS02725GCF_013299825#G4465_RS02725
HKClassicCurrent focus
94 142-95 710 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299825#G4465_RS02725The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1385151
Simplified PFAM architecture for HKOC_1385151
PFAM domain coverage: 231 / 522 aa (44.3%)
1 aa522 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[248-298] | His_kinase[315-390] | HATPase_c[408-511]
- Domain count: 3
- Matched identifier: HKOC_1385151
- Positioned domains: HAMP 248-298 ; His_kinase 315-390 ; HATPase_c 408-511
Cluster members and taxonomy
Representative gene: GCF_013299825#G4465_RS02725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013299825
AssemblyASM1329982v1 · Contighaploid
Genome composition3 191 344 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key