1 HAMP#1
187-259 aa · 73 aa · 14.7% of protein
Raw token
HAMP:187:0.00000577:259:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4455_RS09790
Histidine kinase, Classic
Blautia wexlerae · GCF_013299815
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299815#G4455_RS09790Stable P2CS identifier used across views.
GenomeGCF_013299815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 498 aa (50.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation3 items
2 His_kinase#2
275-352 aa · 78 aa · 15.7% of protein
Raw token
His_kinase:275:2.29e-29:352:78:803 HATPase_c#3
374-472 aa · 99 aa · 19.9% of protein
Raw token
HATPase_c:374:0.0000000000742:472:104:109- Raw architecture: HAMP:187:0.00000577:259:73:69#His_kinase:275:2.29e-29:352:78:80#HATPase_c:374:0.0000000000742:472:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299815::NZ_JAAIMU010000027.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40130-43276Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4455_09800RefSeq proteinWP_118409127.1
Context group ID
GCF_013299815::NZ_JAAIMU010000027.1::G00026Context members
G4455_RS09785G4455_RS09790
Partner locus tags
G4455_RS09785G4455_RS09790
Partner old locus tags
G4455_09795G4455_09800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118409127.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4455_RS09790Primary locus identifier stored in the genes table.
Old locus tagG4455_09800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMU010000027.1Sequence record reported by the local genomic context database.
Genomic interval41 780-43 276 nt1 497 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 130-43 276 ntGCF_013299815::NZ_JAAIMU010000027.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299815::NZ_JAAIMU010000027.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMU010000027.1All displayed genes belong to this local TCS context.
Neighborhood span40 130-43 276 nt3 147 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 130 nt43 276 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4455_RS09785GCF_013299815#G4455_RS09785
RRunclassified
40 130-41 776 nt · Forward (+)
G4455_RS09790GCF_013299815#G4455_RS09790
HKClassicCurrent focus
41 780-43 276 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS09790The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1489169
Simplified PFAM architecture for HKOC_1489169
PFAM domain coverage: 176 / 498 aa (35.3%)
1 aa498 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[276-352] | HATPase_c[374-472]
- Domain count: 2
- Matched identifier: HKOC_1489169
- Positioned domains: His_kinase 276-352 ; HATPase_c 374-472
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS09790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013299815
AssemblyASM1329981v1 · Contighaploid
Genome composition4 090 678 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 129 · HK 64 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key