1 Response_reg#1
8-116 aa · 109 aa · 20.5% of protein
Raw token
Response_reg:8:3.55e-26:116:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4412_RS11735
Response regulator, unclassified
Coprococcus comes · GCF_013299545
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299545#G4412_RS11735Stable P2CS identifier used across views.
GenomeGCF_013299545Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage141 / 532 aa (26.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
495-526 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:495:0.00000103:526:32:42- Raw architecture: Response_reg:8:3.55e-26:116:109:111#HTH_AraC:495:0.00000103:526:32:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299545::NZ_JAAILU010000013.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40386-43762Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4412_11730RefSeq proteinWP_173686889.1
Context group ID
GCF_013299545::NZ_JAAILU010000013.1::G00005Context members
G4412_RS11735G4412_RS11740
Partner locus tags
G4412_RS11735G4412_RS11740
Partner old locus tags
G4412_11730G4412_11735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173686889.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4412_RS11735Primary locus identifier stored in the genes table.
Old locus tagG4412_11730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILU010000013.1Sequence record reported by the local genomic context database.
Genomic interval40 386-41 984 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 386-43 762 ntGCF_013299545::NZ_JAAILU010000013.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299545::NZ_JAAILU010000013.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILU010000013.1All displayed genes belong to this local TCS context.
Neighborhood span40 386-43 762 nt3 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 386 nt43 762 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4412_RS11735GCF_013299545#G4412_RS11735
RRunclassifiedCurrent focus
40 386-41 984 nt · Forward (+)
G4412_RS11740GCF_013299545#G4412_RS11740
HKClassic
41 981-43 762 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299545#G4412_RS11735The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0108509
Simplified PFAM architecture for RROC_0108509
PFAM domain coverage: 294 / 532 aa (55.3%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[7-118] | GGDEF_2[183-286] | HTH_18[451-528]
- Domain count: 3
- Matched identifier: RROC_0108509
- Positioned domains: Response_reg 7-118 ; GGDEF_2 183-286 ; HTH_18 451-528
Cluster members and taxonomy
Representative gene: GCF_013299545#G4412_RS11735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299545
AssemblyASM1329954v1 · Contighaploid
Genome composition3 372 884 bp · 43,0% GCCoprococcus comes
Signal transduction countsGenes 81 · HK 39 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key