1 Response_reg#1
11-121 aa · 111 aa · 45.5% of protein
Raw token
Response_reg:11:2.99e-30:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HCN89_RS00365
Response regulator OmpR family
Clostridioides difficile · GCF_012952655
ClassRRTypeOmpRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012952655#HCN89_RS00365Stable P2CS identifier used across views.
GenomeGCF_012952655Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 244 aa (77.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
162-238 aa · 77 aa · 31.6% of protein
Raw token
Trans_reg_C:162:2.2e-28:238:77:77- Raw architecture: Response_reg:11:2.99e-30:121:112:111#Trans_reg_C:162:2.2e-28:238:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012952655::NZ_JAATIE010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41454-43290Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHCN89_00365RefSeq proteinWP_003421230.1
Context group ID
GCF_012952655::NZ_JAATIE010000001.1::G00001Context members
HCN89_RS19780HCN89_RS00365
Partner locus tags
HCN89_RS19780HCN89_RS00365
Partner old locus tags
HCN89_00365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003421230.1Primary protein accession used for annex mappings.
UniProt accessionD5Q1S1Primary UniProt accession resolved in the annex database.
UniProt IDD5Q1S1_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHCN89_RS00365Primary locus identifier stored in the genes table.
Old locus tagHCN89_00365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATIE010000001.1Sequence record reported by the local genomic context database.
Genomic interval42 556-43 290 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 454-43 290 ntGCF_012952655::NZ_JAATIE010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012952655::NZ_JAATIE010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATIE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span41 454-43 290 nt1 837 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 454 nt43 290 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HCN89_RS19780GCF_012952655#HCN89_RS19780
HKClassic
41 454-42 218 nt · Reverse (-)
HCN89_RS00365GCF_012952655#HCN89_RS00365
RROmpRCurrent focus
42 556-43 290 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0200315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0806097
Simplified PFAM architecture for RROC_0806097
PFAM domain coverage: 188 / 244 aa (77.0%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-121] | Trans_reg_C[162-238]
- Domain count: 2
- Matched identifier: RROC_0806097
- Positioned domains: Response_reg 11-121 ; Response_reg 11-121 ; Trans_reg_C 162-238 ; Trans_reg_C 162-238
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0200315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012952655
AssemblyASM1295265v1 · Contighaploid
Genome composition4 226 733 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 48 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key