1 Response_reg#1
21-126 aa · 106 aa · 40.5% of protein
Raw token
Response_reg:21:0.000000000000038:126:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G1C96_RS08075
Response regulator NarL family
Bifidobacterium moraviense · GCF_012932365
ClassRRTypeNarLLength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_012932365#G1C96_RS08075Stable P2CS identifier used across views.
GenomeGCF_012932365Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 262 aa (61.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
178-233 aa · 56 aa · 21.4% of protein
Raw token
HTH_LUXR:178:1.07e-18:233:56:58- Raw architecture: Response_reg:21:0.000000000000038:126:106:111#HTH_LUXR:178:1.07e-18:233:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_012932365::NZ_JAAIIH010000014.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13637-14425Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG1C96_1578RefSeq proteinWP_169276082.1
Context group ID
GCF_012932365::NZ_JAAIIH010000014.1::G00012Context members
G1C96_RS08075
Partner locus tags
G1C96_RS08075
Partner old locus tags
G1C96_1578
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_169276082.1Primary protein accession used for annex mappings.
UniProt accessionA0A7Y0HY73Primary UniProt accession resolved in the annex database.
UniProt IDA0A7Y0HY73_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG1C96_RS08075Primary locus identifier stored in the genes table.
Old locus tagG1C96_1578Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIIH010000014.1Sequence record reported by the local genomic context database.
Genomic interval13 637-14 425 nt789 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 637-14 425 ntGCF_012932365::NZ_JAAIIH010000014.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012932365::NZ_JAAIIH010000014.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIIH010000014.1All displayed genes belong to this local TCS context.
Neighborhood span13 637-14 425 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 637 nt14 425 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G1C96_RS08075GCF_012932365#G1C96_RS08075
RRNarLCurrent focus
13 637-14 425 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012932365#G1C96_RS08075The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0645645
Simplified PFAM architecture for RROC_0645645
PFAM domain coverage: 160 / 262 aa (61.1%)
1 aa262 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[21-127] | GerE[180-232]
- Domain count: 2
- Matched identifier: RROC_0645645
- Positioned domains: Response_reg 21-127 ; GerE 180-232
Cluster members and taxonomy
Representative gene: GCF_012932365#G1C96_RS08075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 675 323 · GCF_012932365
AssemblyASM1293236v1 · Contigreference genome · haploid
Genome composition2 563 591 bp · 67,5% GCBifidobacterium moraviense
Signal transduction countsGenes 39 · HK 11 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key