1 HisKA#1
157-221 aa · 65 aa · 16.8% of protein
Raw token
HisKA:157:0.00000000000919:221:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ44_RS16100
Histidine kinase, Classic
Clostridioides difficile · GCF_012276965
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012276965#GSQ44_RS16100Stable P2CS identifier used across views.
GenomeGCF_012276965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 386 aa (47.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa386 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
268-385 aa · 118 aa · 30.6% of protein
Raw token
HATPase_c:268:1.22e-18:385:119:109- Raw architecture: HisKA:157:0.00000000000919:221:65:64#HATPase_c:268:1.22e-18:385:119:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012276965::NZ_JAAXLO010000145.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span684-2613Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ44_16145RefSeq proteinWP_021379944.1
Context group ID
GCF_012276965::NZ_JAAXLO010000145.1::G00011Context members
GSQ44_RS16100GSQ44_RS16105
Partner locus tags
GSQ44_RS16100GSQ44_RS16105
Partner old locus tags
GSQ44_16145GSQ44_16150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021379944.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ44_RS16100Primary locus identifier stored in the genes table.
Old locus tagGSQ44_16145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAXLO010000145.1Sequence record reported by the local genomic context database.
Genomic interval684-1 844 nt1 161 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span684-2 613 ntGCF_012276965::NZ_JAAXLO010000145.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012276965::NZ_JAAXLO010000145.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAXLO010000145.1All displayed genes belong to this local TCS context.
Neighborhood span684-2 613 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
684 nt2 613 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ44_RS16100GCF_012276965#GSQ44_RS16100
HKClassicCurrent focus
684-1 844 nt · Reverse (-)
GSQ44_RS16105GCF_012276965#GSQ44_RS16105
RROmpR
1 945-2 613 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276965#GSQ44_RS16100The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2559779
Simplified PFAM architecture for HKOC_2559779
PFAM domain coverage: 179 / 386 aa (46.4%)
1 aa386 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[158-221] | HATPase_c[269-383]
- Domain count: 2
- Matched identifier: HKOC_2559779
- Positioned domains: HisKA 158-221 ; HATPase_c 269-383
Cluster members and taxonomy
Representative gene: GCF_012276965#GSQ44_RS16100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012276965
AssemblyASM1227696v1 · Contighaploid
Genome composition4 129 981 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 93 · HK 43 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key