1 Response_reg#1
4-108 aa · 105 aa · 44.5% of protein
Raw token
Response_reg:4:9.27e-23:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ44_RS00825
Response regulator LytTR family
Clostridioides difficile · GCF_012276965
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_012276965#GSQ44_RS00825Stable P2CS identifier used across views.
GenomeGCF_012276965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 236 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
141-227 aa · 87 aa · 36.9% of protein
Raw token
LytTR:141:4.71e-19:227:93:98- Raw architecture: Response_reg:4:9.27e-23:108:108:111#LytTR:141:4.71e-19:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_012276965::NZ_JAAXLO010000002.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span30396-31106Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ44_00825RefSeq proteinWP_016728510.1
Context group ID
GCF_012276965::NZ_JAAXLO010000002.1::G00033Context members
GSQ44_RS00825
Partner locus tags
GSQ44_RS00825
Partner old locus tags
GSQ44_00825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016728510.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X8RJZ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X8RJZ0_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ44_RS00825Primary locus identifier stored in the genes table.
Old locus tagGSQ44_00825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAXLO010000002.1Sequence record reported by the local genomic context database.
Genomic interval30 396-31 106 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 396-31 106 ntGCF_012276965::NZ_JAAXLO010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012276965::NZ_JAAXLO010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAXLO010000002.1All displayed genes belong to this local TCS context.
Neighborhood span30 396-31 106 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 396 nt31 106 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GSQ44_RS00825GCF_012276965#GSQ44_RS00825
RRLytTRCurrent focus
30 396-31 106 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0101290Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988923
Simplified PFAM architecture for RROC_0988923
PFAM domain coverage: 194 / 236 aa (82.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-110] | LytTR[141-227]
- Domain count: 2
- Matched identifier: RROC_0988923
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; LytTR 141-227 ; LytTR 141-227
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0101290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012276965
AssemblyASM1227696v1 · Contighaploid
Genome composition4 129 981 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 93 · HK 43 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key