1 Response_reg#1
5-104 aa · 100 aa · 52.4% of protein
Raw token
Response_reg:5:3.92e-31:104:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ44_RS02865
Response regulator, AmiR_NasR family
Clostridioides difficile · GCF_012276965
ClassRRTypeAmiR_NasRLength191 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012276965#GSQ44_RS02865Stable P2CS identifier used across views.
GenomeGCF_012276965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 191 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 25.7% of protein
Raw token
ANTAR:138:3.06e-20:186:49:49- Raw architecture: Response_reg:5:3.92e-31:104:100:111#ANTAR:138:3.06e-20:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012276965::NZ_JAAXLO010000008.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33142-35119Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ44_02880RefSeq proteinWP_021359294.1
Context group ID
GCF_012276965::NZ_JAAXLO010000008.1::G00051Context members
GSQ44_RS02860GSQ44_RS02865
Partner locus tags
GSQ44_RS02860GSQ44_RS02865
Partner old locus tags
GSQ44_02875GSQ44_02880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021359294.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q7ZXK9Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q7ZXK9_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ44_RS02865Primary locus identifier stored in the genes table.
Old locus tagGSQ44_02880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAXLO010000008.1Sequence record reported by the local genomic context database.
Genomic interval34 544-35 119 nt576 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 142-35 119 ntGCF_012276965::NZ_JAAXLO010000008.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012276965::NZ_JAAXLO010000008.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAXLO010000008.1All displayed genes belong to this local TCS context.
Neighborhood span33 142-35 119 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 142 nt35 119 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ44_RS02860GCF_012276965#GSQ44_RS02860
HKClassic
33 142-34 551 nt · Reverse (-)
GSQ44_RS02865GCF_012276965#GSQ44_RS02865
RRAmiR_NasRCurrent focus
34 544-35 119 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030250965#QQO51_RS11900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2157005
Simplified PFAM architecture for RROC_2157005
PFAM domain coverage: 164 / 196 aa (83.7%)
1 aa196 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[10-120] | ANTAR[139-191]
- Domain count: 2
- Matched identifier: RROC_2157005
- Positioned domains: Response_reg 10-120 ; ANTAR 139-191
Cluster members and taxonomy
Representative gene: GCF_030250965#QQO51_RS11900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012276965
AssemblyASM1227696v1 · Contighaploid
Genome composition4 129 981 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 93 · HK 43 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key