1 Response_reg#1
5-109 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:5:3.63e-28:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ50_RS16360
Response regulator OmpR family
Clostridioides difficile · GCF_012276945
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012276945#GSQ50_RS16360Stable P2CS identifier used across views.
GenomeGCF_012276945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 241 aa (75.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-236 aa · 77 aa · 32.0% of protein
Raw token
Trans_reg_C:160:2.48e-32:236:77:77- Raw architecture: Response_reg:5:3.63e-28:109:106:111#Trans_reg_C:160:2.48e-32:236:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012276945::NZ_JAAXLR010000059.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4244-6376Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ50_16360RefSeq proteinWP_167650762.1
Context group ID
GCF_012276945::NZ_JAAXLR010000059.1::G00044Context members
GSQ50_RS16360GSQ50_RS16365
Partner locus tags
GSQ50_RS16360GSQ50_RS16365
Partner old locus tags
GSQ50_16360GSQ50_16365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167650762.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ50_RS16360Primary locus identifier stored in the genes table.
Old locus tagGSQ50_16360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAXLR010000059.1Sequence record reported by the local genomic context database.
Genomic interval4 244-4 969 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 244-6 376 ntGCF_012276945::NZ_JAAXLR010000059.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012276945::NZ_JAAXLR010000059.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAXLR010000059.1All displayed genes belong to this local TCS context.
Neighborhood span4 244-6 376 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 244 nt6 376 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ50_RS16360GCF_012276945#GSQ50_RS16360
RROmpRCurrent focus
4 244-4 969 nt · Forward (+)
GSQ50_RS16365GCF_012276945#GSQ50_RS16365
HKClassic
4 973-6 376 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS16360The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0869986
Simplified PFAM architecture for RROC_0869986
PFAM domain coverage: 184 / 241 aa (76.3%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[160-236]
- Domain count: 2
- Matched identifier: RROC_0869986
- Positioned domains: Response_reg 5-111 ; Trans_reg_C 160-236
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS16360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012276945
AssemblyASM1227694v1 · Contighaploid
Genome composition4 120 378 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key