1 Response_reg#1
3-112 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:3:7.68e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ50_RS16050
Response regulator OmpR family
Clostridioides difficile · GCF_012276945
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012276945#GSQ50_RS16050Stable P2CS identifier used across views.
GenomeGCF_012276945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:150:3.32e-29:226:77:77- Raw architecture: Response_reg:3:7.68e-32:112:111:111#Trans_reg_C:150:3.32e-29:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012276945::NZ_JAAXLR010000056.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14843-16449Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ50_16050RefSeq proteinWP_107578526.1
Context group ID
GCF_012276945::NZ_JAAXLR010000056.1::G00042Context members
GSQ50_RS16045GSQ50_RS16050
Partner locus tags
GSQ50_RS16045GSQ50_RS16050
Partner old locus tags
GSQ50_16045GSQ50_16050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107578526.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ50_RS16050Primary locus identifier stored in the genes table.
Old locus tagGSQ50_16050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAXLR010000056.1Sequence record reported by the local genomic context database.
Genomic interval15 760-16 449 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 843-16 449 ntGCF_012276945::NZ_JAAXLR010000056.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012276945::NZ_JAAXLR010000056.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAXLR010000056.1All displayed genes belong to this local TCS context.
Neighborhood span14 843-16 449 nt1 607 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 843 nt16 449 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ50_RS16045GCF_012276945#GSQ50_RS16045
HKClassic
14 843-15 760 nt · Reverse (-)
GSQ50_RS16050GCF_012276945#GSQ50_RS16050
RROmpRCurrent focus
15 760-16 449 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS16050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1267470
Simplified PFAM architecture for RROC_1267470
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[153-226]
- Domain count: 2
- Matched identifier: RROC_1267470
- Positioned domains: Response_reg 3-112 ; Trans_reg_C 153-226
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS16050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012276945
AssemblyASM1227694v1 · Contighaploid
Genome composition4 120 378 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key