1 HisKA#1
195-255 aa · 61 aa · 14.8% of protein
Raw token
HisKA:195:0.000000000000962:255:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ50_RS12840
Histidine kinase, Classic
Clostridioides difficile · GCF_012276945
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012276945#GSQ50_RS12840Stable P2CS identifier used across views.
GenomeGCF_012276945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 413 aa (40.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa413 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
302-407 aa · 106 aa · 25.7% of protein
Raw token
HATPase_c:302:2.17e-26:407:107:109- Raw architecture: HisKA:195:0.000000000000962:255:61:64#HATPase_c:302:2.17e-26:407:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012276945::NZ_JAAXLR010000034.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34082-36017Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ50_12840RefSeq proteinWP_168347178.1
Context group ID
GCF_012276945::NZ_JAAXLR010000034.1::G00025Context members
GSQ50_RS12835GSQ50_RS12840
Partner locus tags
GSQ50_RS12835GSQ50_RS12840
Partner old locus tags
GSQ50_12835GSQ50_12840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_168347178.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ50_RS12840Primary locus identifier stored in the genes table.
Old locus tagGSQ50_12840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAXLR010000034.1Sequence record reported by the local genomic context database.
Genomic interval34 776-36 017 nt1 242 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 082-36 017 ntGCF_012276945::NZ_JAAXLR010000034.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012276945::NZ_JAAXLR010000034.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAXLR010000034.1All displayed genes belong to this local TCS context.
Neighborhood span34 082-36 017 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 082 nt36 017 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ50_RS12835GCF_012276945#GSQ50_RS12835
RROmpR
34 082-34 765 nt · Forward (+)
GSQ50_RS12840GCF_012276945#GSQ50_RS12840
HKClassicCurrent focus
34 776-36 017 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS12840The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2330443
Simplified PFAM architecture for HKOC_2330443
PFAM domain coverage: 172 / 413 aa (41.6%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[193-255] | HATPase_c[302-410]
- Domain count: 2
- Matched identifier: HKOC_2330443
- Positioned domains: HisKA 193-255 ; HATPase_c 302-410
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS12840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012276945
AssemblyASM1227694v1 · Contighaploid
Genome composition4 120 378 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key