1 Response_reg#1
4-113 aa · 110 aa · 70.5% of protein
Raw token
Response_reg:4:1.96e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ50_RS03185
Response regulator, CheY family
Clostridioides difficile · GCF_012276945
ClassRRTypeCheYLength156 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012276945#GSQ50_RS03185Stable P2CS identifier used across views.
GenomeGCF_012276945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length156 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 156 aa (70.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa156 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.96e-33:113:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012276945::NZ_JAAXLR010000005.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37648-39446Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ50_03185RefSeq proteinWP_330585626.1
Context group ID
GCF_012276945::NZ_JAAXLR010000005.1::G00046Context members
GSQ50_RS03185GSQ50_RS03190
Partner locus tags
GSQ50_RS03185GSQ50_RS03190
Partner old locus tags
GSQ50_03185GSQ50_03190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330585626.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ50_RS03185Primary locus identifier stored in the genes table.
Old locus tagGSQ50_03185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAXLR010000005.1Sequence record reported by the local genomic context database.
Genomic interval37 648-38 118 nt471 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 648-39 446 ntGCF_012276945::NZ_JAAXLR010000005.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012276945::NZ_JAAXLR010000005.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAXLR010000005.1All displayed genes belong to this local TCS context.
Neighborhood span37 648-39 446 nt1 799 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 648 nt39 446 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ50_RS03185GCF_012276945#GSQ50_RS03185
RRCheYCurrent focus
37 648-38 118 nt · Forward (+)
GSQ50_RS03190GCF_012276945#GSQ50_RS03190
HKClassic
38 316-39 446 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS16575Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587883
Simplified PFAM architecture for RROC_1587883
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1587883
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS16575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012276945
AssemblyASM1227694v1 · Contighaploid
Genome composition4 120 378 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key