1 Response_reg#1
4-112 aa · 109 aa · 49.8% of protein
Raw token
Response_reg:4:1.34e-31:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ43_RS00260
Response regulator OmpR family
Clostridioides difficile · GCF_012030175
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012030175#GSQ43_RS00260Stable P2CS identifier used across views.
GenomeGCF_012030175Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 219 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-218 aa · 73 aa · 33.3% of protein
Raw token
Trans_reg_C:146:5.26e-23:218:75:77- Raw architecture: Response_reg:4:1.34e-31:112:112:111#Trans_reg_C:146:5.26e-23:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012030175::NZ_JAAUXG010000001.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span48524-50538Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ43_00260RefSeq proteinWP_021404737.1
Context group ID
GCF_012030175::NZ_JAAUXG010000001.1::G00019Context members
GSQ43_RS00255GSQ43_RS00260
Partner locus tags
GSQ43_RS00255GSQ43_RS00260
Partner old locus tags
GSQ43_00255GSQ43_00260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021404737.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FBH0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FBH0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ43_RS00260Primary locus identifier stored in the genes table.
Old locus tagGSQ43_00260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAUXG010000001.1Sequence record reported by the local genomic context database.
Genomic interval49 879-50 538 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span48 524-50 538 ntGCF_012030175::NZ_JAAUXG010000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012030175::NZ_JAAUXG010000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAUXG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span48 524-50 538 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 524 nt50 538 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ43_RS00255GCF_012030175#GSQ43_RS00255
HKClassic
48 524-49 888 nt · Reverse (-)
GSQ43_RS00260GCF_012030175#GSQ43_RS00260
RROmpRCurrent focus
49 879-50 538 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450605#QME_RS15755Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1769352
Simplified PFAM architecture for RROC_1769352
PFAM domain coverage: 181 / 219 aa (82.6%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1769352
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-217 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_000450605#QME_RS15755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012030175
AssemblyASM1203017v1 · Contighaploid
Genome composition4 172 576 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 43 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key