1 HAMP#1
198-268 aa · 71 aa · 13.8% of protein
Raw token
HAMP:198:0.000000000000435:268:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BXA52_RS13740
Histidine kinase, Classic
Enterococcus faecium · GCF_011316265
ClassHKTypeClassicLength513 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_011316265#BXA52_RS13740Stable P2CS identifier used across views.
GenomeGCF_011316265Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length513 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 513 aa (48.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
273-339 aa · 67 aa · 13.1% of protein
Raw token
HisKA:273:0.00000000000000274:339:67:643 HATPase_c#3
387-497 aa · 111 aa · 21.6% of protein
Raw token
HATPase_c:387:9.39e-28:497:111:109- Raw architecture: HAMP:198:0.000000000000435:268:71:69#HisKA:273:0.00000000000000274:339:67:64#HATPase_c:387:9.39e-28:497:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_011316265::NZ_MTRX01000289.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1723-3947Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBXA52_14850RefSeq proteinWP_165636624.1
Context group ID
GCF_011316265::NZ_MTRX01000289.1::G00014Context members
BXA52_RS13735BXA52_RS13740
Partner locus tags
BXA52_RS13735BXA52_RS13740
Partner old locus tags
BXA52_14845BXA52_14850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_165636624.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBXA52_RS13740Primary locus identifier stored in the genes table.
Old locus tagBXA52_14850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTRX01000289.1Sequence record reported by the local genomic context database.
Genomic interval2 406-3 947 nt1 542 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 723-3 947 ntGCF_011316265::NZ_MTRX01000289.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011316265::NZ_MTRX01000289.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTRX01000289.1All displayed genes belong to this local TCS context.
Neighborhood span1 723-3 947 nt2 225 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 723 nt3 947 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BXA52_RS13735GCF_011316265#BXA52_RS13735
RROmpR
1 723-2 409 nt · Forward (+)
BXA52_RS13740GCF_011316265#BXA52_RS13740
HKClassicCurrent focus
2 406-3 947 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_011316265#BXA52_RS13740The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1416543
Simplified PFAM architecture for HKOC_1416543
PFAM domain coverage: 377 / 513 aa (73.5%)
1 aa513 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[46-193] | HAMP[215-268] | HisKA[274-339] | HATPase_c[388-496]
- Domain count: 4
- Matched identifier: HKOC_1416543
- Positioned domains: ArlS_N 46-193 ; HAMP 215-268 ; HisKA 274-339 ; HATPase_c 388-496
Cluster members and taxonomy
Representative gene: GCF_011316265#BXA52_RS13740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_011316265
AssemblyASM1131626v1 · Contighaploid
Genome composition3 470 500 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key