1 His_kinase#1
315-393 aa · 79 aa · 15.1% of protein
Raw token
His_kinase:315:1.68e-20:393:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BXA52_RS10970
Histidine kinase, Classic
Enterococcus faecium · GCF_011316265
ClassHKTypeClassicLength524 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_011316265#BXA52_RS10970Stable P2CS identifier used across views.
GenomeGCF_011316265Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length524 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 524 aa (34.4%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa524 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
411-511 aa · 101 aa · 19.3% of protein
Raw token
HATPase_c:411:0.000000164:511:104:109- Raw architecture: His_kinase:315:1.68e-20:393:80:80#HATPase_c:411:0.000000164:511:104:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_011316265::NZ_MTRX01000197.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13845-16125Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBXA52_11855RefSeq proteinWP_002340467.1
Context group ID
GCF_011316265::NZ_MTRX01000197.1::G00010Context members
BXA52_RS10970BXA52_RS10975
Partner locus tags
BXA52_RS10970BXA52_RS10975
Partner old locus tags
BXA52_11855BXA52_11860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002340467.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7LQ67Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7LQ67_ENTFCDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBXA52_RS10970Primary locus identifier stored in the genes table.
Old locus tagBXA52_11855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTRX01000197.1Sequence record reported by the local genomic context database.
Genomic interval13 845-15 419 nt1 575 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 845-16 125 ntGCF_011316265::NZ_MTRX01000197.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011316265::NZ_MTRX01000197.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTRX01000197.1All displayed genes belong to this local TCS context.
Neighborhood span13 845-16 125 nt2 281 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 845 nt16 125 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BXA52_RS10970GCF_011316265#BXA52_RS10970
HKClassicCurrent focus
13 845-15 419 nt · Forward (+)
BXA52_RS10975GCF_011316265#BXA52_RS10975
RRunclassified
15 397-16 125 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172915#EFMU0317_RS07900Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1377162
Simplified PFAM architecture for HKOC_1377162
PFAM domain coverage: 180 / 524 aa (34.4%)
1 aa524 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[315-392] | HATPase_c[411-512]
- Domain count: 2
- Matched identifier: HKOC_1377162
- Positioned domains: His_kinase 315-392 ; HATPase_c 411-512
Cluster members and taxonomy
Representative gene: GCF_000172915#EFMU0317_RS07900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_011316265
AssemblyASM1131626v1 · Contighaploid
Genome composition3 470 500 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key