1 Response_reg#1
3-113 aa · 111 aa · 46.6% of protein
Raw token
Response_reg:3:3.03e-26:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BXA52_RS04940
Response regulator OmpR family
Enterococcus faecium · GCF_011316265
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_011316265#BXA52_RS04940Stable P2CS identifier used across views.
GenomeGCF_011316265Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 238 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-232 aa · 76 aa · 31.9% of protein
Raw token
Trans_reg_C:157:3.42e-36:232:78:77- Raw architecture: Response_reg:3:3.03e-26:113:111:111#Trans_reg_C:157:3.42e-36:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_011316265::NZ_MTRX01000082.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2476-4640Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBXA52_05250RefSeq proteinWP_002288590.1
Context group ID
GCF_011316265::NZ_MTRX01000082.1::G00023Context members
BXA52_RS04940BXA52_RS04945
Partner locus tags
BXA52_RS04940BXA52_RS04945
Partner old locus tags
BXA52_05250BXA52_05255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002288590.1Primary protein accession used for annex mappings.
UniProt accessionQ3XZ22Primary UniProt accession resolved in the annex database.
UniProt IDQ3XZ22_ENTFDDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBXA52_RS04940Primary locus identifier stored in the genes table.
Old locus tagBXA52_05250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTRX01000082.1Sequence record reported by the local genomic context database.
Genomic interval2 476-3 192 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 476-4 640 ntGCF_011316265::NZ_MTRX01000082.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011316265::NZ_MTRX01000082.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTRX01000082.1All displayed genes belong to this local TCS context.
Neighborhood span2 476-4 640 nt2 165 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 476 nt4 640 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BXA52_RS04940GCF_011316265#BXA52_RS04940
RROmpRCurrent focus
2 476-3 192 nt · Forward (+)
BXA52_RS04945GCF_011316265#BXA52_RS04945
HKClassic
3 192-4 640 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS08710Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932482
Simplified PFAM architecture for RROC_0932482
PFAM domain coverage: 182 / 238 aa (76.5%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-114] | Trans_reg_C[163-232]
- Domain count: 2
- Matched identifier: RROC_0932482
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; Trans_reg_C 163-232 ; Trans_reg_C 163-232
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS08710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_011316265
AssemblyASM1131626v1 · Contighaploid
Genome composition3 470 500 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key