1 Response_reg#1
5-113 aa · 109 aa · 48.7% of protein
Raw token
Response_reg:5:1.87e-31:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BXA52_RS08020
Response regulator OmpR family
Enterococcus faecium · GCF_011316265
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_011316265#BXA52_RS08020Stable P2CS identifier used across views.
GenomeGCF_011316265Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.5% of protein
Raw token
Trans_reg_C:147:2.64e-23:221:76:77- Raw architecture: Response_reg:5:1.87e-31:113:110:111#Trans_reg_C:147:2.64e-23:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_011316265::NZ_MTRX01000136.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span350-2369Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBXA52_08580RefSeq proteinWP_002311113.1
Context group ID
GCF_011316265::NZ_MTRX01000136.1::G00005Context members
BXA52_RS08015BXA52_RS08020
Partner locus tags
BXA52_RS08015BXA52_RS08020
Partner old locus tags
BXA52_08575BXA52_08580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002311113.1Primary protein accession used for annex mappings.
UniProt accessionA0A132PA87Primary UniProt accession resolved in the annex database.
UniProt IDA0A132PA87_ENTFCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBXA52_RS08020Primary locus identifier stored in the genes table.
Old locus tagBXA52_08580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTRX01000136.1Sequence record reported by the local genomic context database.
Genomic interval1 695-2 369 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span350-2 369 ntGCF_011316265::NZ_MTRX01000136.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011316265::NZ_MTRX01000136.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTRX01000136.1All displayed genes belong to this local TCS context.
Neighborhood span350-2 369 nt2 020 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
350 nt2 369 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BXA52_RS08015GCF_011316265#BXA52_RS08015
HKClassic
350-1 690 nt · Reverse (-)
BXA52_RS08020GCF_011316265#BXA52_RS08020
RROmpRCurrent focus
1 695-2 369 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157595#EFTG_RS08070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529154
Simplified PFAM architecture for RROC_1529154
PFAM domain coverage: 182 / 224 aa (81.3%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1529154
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000157595#EFTG_RS08070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_011316265
AssemblyASM1131626v1 · Contighaploid
Genome composition3 470 500 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key