1 Response_reg#1
14-121 aa · 108 aa · 45.2% of protein
Raw token
Response_reg:14:8.4e-32:121:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS11605
Response regulator OmpR family
Amedibacterium intestinale · GCF_010537155
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_010537155#Aargi30884_RS11605Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 239 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-237 aa · 78 aa · 32.6% of protein
Raw token
Trans_reg_C:160:8.25e-31:237:78:77- Raw architecture: Response_reg:14:8.4e-32:121:110:111#Trans_reg_C:160:8.25e-31:237:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_010537155::NZ_AP019695.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2310080-2310799Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_22760RefSeq proteinWP_240145514.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00020Context members
Aargi30884_RS11605
Partner locus tags
Aargi30884_RS11605
Partner old locus tags
Aargi30884_22760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_240145514.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TKV9Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TKV9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS11605Primary locus identifier stored in the genes table.
Old locus tagAargi30884_22760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval2 310 080-2 310 799 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 310 080-2 310 799 ntGCF_010537155::NZ_AP019695.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span2 310 080-2 310 799 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 310 080 nt2 310 799 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Aargi30884_RS11605GCF_010537155#Aargi30884_RS11605
RROmpRCurrent focus
2 310 080-2 310 799 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS11605The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0915744
Simplified PFAM architecture for RROC_0915744
PFAM domain coverage: 186 / 239 aa (77.8%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[14-121] | Trans_reg_C[160-237]
- Domain count: 2
- Matched identifier: RROC_0915744
- Positioned domains: Response_reg 14-121 ; Response_reg 14-121 ; Trans_reg_C 160-237 ; Trans_reg_C 160-237
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS11605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key