1 HisKA#1
190-252 aa · 63 aa · 15.6% of protein
Raw token
HisKA:190:0.0000000000248:252:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS04425
Histidine kinase, Classic
Amedibacterium intestinale · GCF_010537155
ClassHKTypeClassicLength403 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS04425Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length403 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 403 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa403 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
303-401 aa · 99 aa · 24.6% of protein
Raw token
HATPase_c:303:4.03e-25:401:100:109- Raw architecture: HisKA:190:0.0000000000248:252:63:64#HATPase_c:303:4.03e-25:401:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span837969-839822Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_08690RefSeq proteinWP_163051592.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00009Context members
Aargi30884_RS04425Aargi30884_RS04430
Partner locus tags
Aargi30884_RS04425Aargi30884_RS04430
Partner old locus tags
Aargi30884_08690Aargi30884_08700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_163051592.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TFN2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TFN2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS04425Primary locus identifier stored in the genes table.
Old locus tagAargi30884_08690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval837 969-839 180 nt1 212 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span837 969-839 822 ntGCF_010537155::NZ_AP019695.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span837 969-839 822 nt1 854 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
837 969 nt839 822 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS04425GCF_010537155#Aargi30884_RS04425
HKClassicCurrent focus
837 969-839 180 nt · Reverse (-)
Aargi30884_RS04430GCF_010537155#Aargi30884_RS04430
RROmpR
839 226-839 822 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS04425The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2417152
Simplified PFAM architecture for HKOC_2417152
PFAM domain coverage: 161 / 403 aa (40.0%)
1 aa403 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[189-251] | HATPase_c[304-401]
- Domain count: 2
- Matched identifier: HKOC_2417152
- Positioned domains: HisKA 189-251 ; HATPase_c 304-401
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS04425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key