1 Response_reg#1
5-112 aa · 108 aa · 48.0% of protein
Raw token
Response_reg:5:7.42e-26:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DDA13_RS17710
Response regulator OmpR family
Clostridioides difficile · GCF_009903395
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_009903395#DDA13_RS17710Stable P2CS identifier used across views.
GenomeGCF_009903395Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-223 aa · 77 aa · 34.2% of protein
Raw token
Trans_reg_C:147:8.79e-29:223:77:77- Raw architecture: Response_reg:5:7.42e-26:112:109:111#Trans_reg_C:147:8.79e-29:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_009903395::NZ_QLOA01000002.1::G00055
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span3826416-3829910Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDDA13_18245RefSeq proteinWP_161419952.1
Context group ID
GCF_009903395::NZ_QLOA01000002.1::G00055Context members
DDA13_RS17700DDA13_RS17705DDA13_RS17710
Partner locus tags
DDA13_RS17700DDA13_RS17705DDA13_RS17710
Partner old locus tags
DDA13_18235DDA13_18240DDA13_18245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161419952.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDDA13_RS17710Primary locus identifier stored in the genes table.
Old locus tagDDA13_18245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QLOA01000002.1Sequence record reported by the local genomic context database.
Genomic interval3 829 233-3 829 910 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 826 416-3 829 910 ntGCF_009903395::NZ_QLOA01000002.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009903395::NZ_QLOA01000002.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QLOA01000002.1All displayed genes belong to this local TCS context.
Neighborhood span3 826 416-3 829 910 nt3 495 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 826 416 nt3 829 910 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DDA13_RS17700GCF_009903395#DDA13_RS17700
RROmpR
3 826 416-3 827 096 nt · Reverse (-)
DDA13_RS17705GCF_009903395#DDA13_RS17705
HKClassic
3 827 146-3 829 161 nt · Reverse (-)
DDA13_RS17710GCF_009903395#DDA13_RS17710
RROmpRCurrent focus
3 829 233-3 829 910 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009903395#DDA13_RS17710The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1486629
Simplified PFAM architecture for RROC_1486629
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[147-223]
- Domain count: 2
- Matched identifier: RROC_1486629
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 147-223 ; Trans_reg_C 147-223
Cluster members and taxonomy
Representative gene: GCF_009903395#DDA13_RS17710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_009903395
AssemblyASM990339v1 · Contighaploid
Genome composition4 334 203 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 51 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key