1 Response_reg#1
4-113 aa · 110 aa · 19.9% of protein
Raw token
Response_reg:4:4.04e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DDA10_RS21640
Histidine kinase, Hybrid
Clostridioides difficile · GCF_009903385
ClassHKTypeHybridLength553 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009903385#DDA10_RS21640Stable P2CS identifier used across views.
GenomeGCF_009903385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_CHisKAHATPase_c
Protein length553 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage356 / 553 aa (64.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_C,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa553 aa
Domain-by-domain annotation4 items
2 Trans_reg_C#2
144-221 aa · 78 aa · 14.1% of protein
Raw token
Trans_reg_C:144:3.2e-28:221:78:773 HisKA#3
341-401 aa · 61 aa · 11.0% of protein
Raw token
HisKA:341:0.0000000000793:401:61:644 HATPase_c#4
446-552 aa · 107 aa · 19.3% of protein
Raw token
HATPase_c:446:1.7e-23:552:108:109- Raw architecture: Response_reg:4:4.04e-32:113:111:111#Trans_reg_C:144:3.2e-28:221:78:77#HisKA:341:0.0000000000793:401:61:64#HATPase_c:446:1.7e-23:552:108:109
- Domain description: 1 Response_reg,1 Trans_reg_C,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009903385::NZ_QLOB01000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span102093-103754Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDDA10_00535RefSeq proteinWP_161420252.1
Context group ID
GCF_009903385::NZ_QLOB01000001.1::G00002Context members
DDA10_RS21640
Partner locus tags
DDA10_RS21640
Partner old locus tags
DDA10_00535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161420252.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDDA10_RS21640Primary locus identifier stored in the genes table.
Old locus tagDDA10_00535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QLOB01000001.1Sequence record reported by the local genomic context database.
Genomic interval102 093-103 754 nt1 662 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span102 093-103 754 ntGCF_009903385::NZ_QLOB01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009903385::NZ_QLOB01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QLOB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span102 093-103 754 nt1 662 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 093 nt103 754 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DDA10_RS21640GCF_009903385#DDA10_RS21640
HKHybridCurrent focus
102 093-103 754 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009903385#DDA10_RS21640The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1284413
Simplified PFAM architecture for HKOC_1284413
PFAM domain coverage: 357 / 553 aa (64.6%)
1 aa553 aa
Response_regTrans_reg_CHisKAHATPase_c
- Simplified architecture: Response_reg + Trans_reg_C + HisKA + HATPase_c
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-221] | HisKA[340-401] | HATPase_c[446-552]
- Domain count: 4
- Matched identifier: HKOC_1284413
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 144-221 ; HisKA 340-401 ; HATPase_c 446-552
Cluster members and taxonomy
Representative gene: GCF_009903385#DDA10_RS21640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_009903385
AssemblyASM990338v1 · Contighaploid
Genome composition4 397 387 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 50 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key