1 sCache_like#1
43-132 aa · 90 aa · 20.1% of protein
Raw token
sCache_like:43:0.0000000000124:132:95:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT705_RS15020
Histidine kinase, Classic
Blautia wexlerae · GCF_009881395
ClassHKTypeClassicLength447 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881395#GT705_RS15020Stable P2CS identifier used across views.
GenomeGCF_009881395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length447 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage269 / 447 aa (60.2%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa447 aa
Domain-by-domain annotation3 items
2 HisKA#2
225-290 aa · 66 aa · 14.8% of protein
Raw token
HisKA:225:2.12e-17:290:66:643 HATPase_c#3
335-447 aa · 113 aa · 25.3% of protein
Raw token
HATPase_c:335:5.07e-28:447:113:109- Raw architecture: sCache_like:43:0.0000000000124:132:95:114#HisKA:225:2.12e-17:290:66:64#HATPase_c:335:5.07e-28:447:113:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881395::NZ_WWVG01000056.1::G00062
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5977-8022Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT705_15065RefSeq proteinWP_161280921.1
Context group ID
GCF_009881395::NZ_WWVG01000056.1::G00062Context members
GT705_RS15020GT705_RS15025
Partner locus tags
GT705_RS15020GT705_RS15025
Partner old locus tags
GT705_15065GT705_15070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161280921.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT705_RS15020Primary locus identifier stored in the genes table.
Old locus tagGT705_15065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVG01000056.1Sequence record reported by the local genomic context database.
Genomic interval5 977-7 320 nt1 344 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 977-8 022 ntGCF_009881395::NZ_WWVG01000056.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881395::NZ_WWVG01000056.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVG01000056.1All displayed genes belong to this local TCS context.
Neighborhood span5 977-8 022 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 977 nt8 022 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT705_RS15020GCF_009881395#GT705_RS15020
HKClassicCurrent focus
5 977-7 320 nt · Reverse (-)
GT705_RS15025GCF_009881395#GT705_RS15025
RROmpR
7 354-8 022 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009881345#GT686_RS12285Use this link to inspect the representative gene detail.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2003091
Simplified PFAM architecture for HKOC_2003091
PFAM domain coverage: 266 / 447 aa (59.5%)
1 aa447 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[41-132] | HisKA[225-290] | HATPase_c[338-445]
- Domain count: 3
- Matched identifier: HKOC_2003091
- Positioned domains: sCache_like 41-132 ; HisKA 225-290 ; HATPase_c 338-445
Cluster members and taxonomy
Representative gene: GCF_009881345#GT686_RS12285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881395
AssemblyASM988139v1 · Contighaploid
Genome composition4 112 044 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 138 · HK 66 · RR 70CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key