1 Response_reg#1
4-117 aa · 114 aa · 47.5% of protein
Raw token
Response_reg:4:1.34e-28:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT705_RS12675
Response regulator, unclassified
Blautia wexlerae · GCF_009881395
ClassRRTypeunclassifiedLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881395#GT705_RS12675Stable P2CS identifier used across views.
GenomeGCF_009881395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 240 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
145-186 aa · 42 aa · 17.5% of protein
Raw token
HTH_AraC:145:0.000000792:186:42:423 HTH_AraC#3
200-234 aa · 35 aa · 14.6% of protein
Raw token
HTH_AraC:200:0.00000246:234:35:42- Raw architecture: Response_reg:4:1.34e-28:117:114:111#HTH_AraC:145:0.000000792:186:42:42#HTH_AraC:200:0.00000246:234:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881395::NZ_WWVG01000040.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15288-17818Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT705_12700RefSeq proteinWP_161276494.1
Context group ID
GCF_009881395::NZ_WWVG01000040.1::G00046Context members
GT705_RS12670GT705_RS12675
Partner locus tags
GT705_RS12670GT705_RS12675
Partner old locus tags
GT705_12695GT705_12700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161276494.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8XXH2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8XXH2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT705_RS12675Primary locus identifier stored in the genes table.
Old locus tagGT705_12700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVG01000040.1Sequence record reported by the local genomic context database.
Genomic interval17 096-17 818 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 288-17 818 ntGCF_009881395::NZ_WWVG01000040.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881395::NZ_WWVG01000040.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVG01000040.1All displayed genes belong to this local TCS context.
Neighborhood span15 288-17 818 nt2 531 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 288 nt17 818 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT705_RS12670GCF_009881395#GT705_RS12670
HKClassic
15 288-17 081 nt · Forward (+)
GT705_RS12675GCF_009881395#GT705_RS12675
RRunclassifiedCurrent focus
17 096-17 818 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009881235#GT685_RS14745Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0890678
Simplified PFAM architecture for RROC_0890678
PFAM domain coverage: 190 / 240 aa (79.2%)
1 aa240 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[158-234]
- Domain count: 2
- Matched identifier: RROC_0890678
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 158-234 ; HTH_18 158-234
Cluster members and taxonomy
Representative gene: GCF_009881235#GT685_RS14745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881395
AssemblyASM988139v1 · Contighaploid
Genome composition4 112 044 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 138 · HK 66 · RR 70CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key