1 dCache_1#1
146-269 aa · 124 aa · 20.5% of protein
Raw token
dCache_1:146:0.000000209:269:124:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT705_RS11405
Histidine kinase, Classic
Blautia wexlerae · GCF_009881395
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881395#GT705_RS11405Stable P2CS identifier used across views.
GenomeGCF_009881395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage310 / 606 aa (51.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation3 items
2 His_kinase#2
393-478 aa · 86 aa · 14.2% of protein
Raw token
His_kinase:393:4.94e-22:478:86:803 HATPase_c#3
501-600 aa · 100 aa · 16.5% of protein
Raw token
HATPase_c:501:0.0000000141:600:104:109- Raw architecture: dCache_1:146:0.000000209:269:124:195#His_kinase:393:4.94e-22:478:86:80#HATPase_c:501:0.0000000141:600:104:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881395::NZ_WWVG01000033.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14001-17360Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT705_11430RefSeq proteinWP_025579321.1
Context group ID
GCF_009881395::NZ_WWVG01000033.1::G00039Context members
GT705_RS11400GT705_RS11405
Partner locus tags
GT705_RS11400GT705_RS11405
Partner old locus tags
GT705_11425GT705_11430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025579321.1Primary protein accession used for annex mappings.
UniProt accessionA0A174RGA4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174RGA4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT705_RS11405Primary locus identifier stored in the genes table.
Old locus tagGT705_11430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVG01000033.1Sequence record reported by the local genomic context database.
Genomic interval15 540-17 360 nt1 821 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 001-17 360 ntGCF_009881395::NZ_WWVG01000033.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881395::NZ_WWVG01000033.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVG01000033.1All displayed genes belong to this local TCS context.
Neighborhood span14 001-17 360 nt3 360 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 001 nt17 360 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT705_RS11400GCF_009881395#GT705_RS11400
RRunclassified
14 001-15 485 nt · Reverse (-)
GT705_RS11405GCF_009881395#GT705_RS11405
HKClassicCurrent focus
15 540-17 360 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0111530Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1023425
Simplified PFAM architecture for HKOC_1023425
PFAM domain coverage: 84 / 606 aa (13.9%)
1 aa606 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[394-477]
- Domain count: 1
- Matched identifier: HKOC_1023425
- Positioned domains: His_kinase 394-477
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0111530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881395
AssemblyASM988139v1 · Contighaploid
Genome composition4 112 044 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 138 · HK 66 · RR 70CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key