1 Response_reg#1
5-107 aa · 103 aa · 96.3% of protein
Raw token
Response_reg:5:8.83e-26:107:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT705_RS03740
Response regulator, CheY family
Blautia wexlerae · GCF_009881395
ClassRRTypeCheYLength107 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009881395#GT705_RS03740Stable P2CS identifier used across views.
GenomeGCF_009881395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length107 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage103 / 107 aa (96.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa107 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:8.83e-26:107:103:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009881395::NZ_WWVG01000008.1::G00081
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-322Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT705_03745RefSeq proteinWP_161298910.1
Context group ID
GCF_009881395::NZ_WWVG01000008.1::G00081Context members
GT705_RS03740
Partner locus tags
GT705_RS03740
Partner old locus tags
GT705_03745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161298910.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT705_RS03740Primary locus identifier stored in the genes table.
Old locus tagGT705_03745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVG01000008.1Sequence record reported by the local genomic context database.
Genomic interval1-322 nt322 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-322 ntGCF_009881395::NZ_WWVG01000008.1::G00081
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881395::NZ_WWVG01000008.1::G00081Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVG01000008.1All displayed genes belong to this local TCS context.
Neighborhood span1-322 nt322 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt322 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT705_RS03740GCF_009881395#GT705_RS03740
RRCheYCurrent focus
1-322 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS13865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1470797
Simplified PFAM architecture for RROC_1470797
PFAM domain coverage: 181 / 225 aa (80.4%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1470797
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS13865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881395
AssemblyASM988139v1 · Contighaploid
Genome composition4 112 044 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 138 · HK 66 · RR 70CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key