1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:5.84e-31:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT705_RS02635
Response regulator OmpR family
Blautia wexlerae · GCF_009881395
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009881395#GT705_RS02635Stable P2CS identifier used across views.
GenomeGCF_009881395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 227 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-221 aa · 71 aa · 31.3% of protein
Raw token
Trans_reg_C:151:4.49e-16:221:72:77- Raw architecture: Response_reg:4:5.84e-31:113:111:111#Trans_reg_C:151:4.49e-16:221:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009881395::NZ_WWVG01000005.1::G00066
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span64956-65639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT705_02635RefSeq proteinWP_226838039.1
Context group ID
GCF_009881395::NZ_WWVG01000005.1::G00066Context members
GT705_RS02635
Partner locus tags
GT705_RS02635
Partner old locus tags
GT705_02635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_226838039.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT2RLB9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT2RLB9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT705_RS02635Primary locus identifier stored in the genes table.
Old locus tagGT705_02635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVG01000005.1Sequence record reported by the local genomic context database.
Genomic interval64 956-65 639 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span64 956-65 639 ntGCF_009881395::NZ_WWVG01000005.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881395::NZ_WWVG01000005.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span64 956-65 639 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 956 nt65 639 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT705_RS02635GCF_009881395#GT705_RS02635
RROmpRCurrent focus
64 956-65 639 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404875#ARA07_RS03835Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1360164
Simplified PFAM architecture for RROC_1360164
PFAM domain coverage: 180 / 227 aa (79.3%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-221]
- Domain count: 2
- Matched identifier: RROC_1360164
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-221 ; Trans_reg_C 152-221
Cluster members and taxonomy
Representative gene: GCF_001404875#ARA07_RS03835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881395
AssemblyASM988139v1 · Contighaploid
Genome composition4 112 044 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 138 · HK 66 · RR 70CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key