1 Response_reg#1
5-112 aa · 108 aa · 49.1% of protein
Raw token
Response_reg:5:6.95e-35:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT686_RS07825
Response regulator OmpR family
Blautia wexlerae · GCF_009881345
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881345#GT686_RS07825Stable P2CS identifier used across views.
GenomeGCF_009881345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 220 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.6% of protein
Raw token
Trans_reg_C:146:1.21e-24:219:76:77- Raw architecture: Response_reg:5:6.95e-35:112:110:111#Trans_reg_C:146:1.21e-24:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881345::NZ_WWVC01000011.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42727-44744Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT686_07810RefSeq proteinWP_172679304.1
Context group ID
GCF_009881345::NZ_WWVC01000011.1::G00005Context members
GT686_RS07820GT686_RS07825
Partner locus tags
GT686_RS07820GT686_RS07825
Partner old locus tags
GT686_07805GT686_07810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_172679304.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1C5Q7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1C5Q7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT686_RS07825Primary locus identifier stored in the genes table.
Old locus tagGT686_07810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVC01000011.1Sequence record reported by the local genomic context database.
Genomic interval44 082-44 744 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 727-44 744 ntGCF_009881345::NZ_WWVC01000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881345::NZ_WWVC01000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVC01000011.1All displayed genes belong to this local TCS context.
Neighborhood span42 727-44 744 nt2 018 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 727 nt44 744 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT686_RS07820GCF_009881345#GT686_RS07820
HKClassic
42 727-44 091 nt · Reverse (-)
GT686_RS07825GCF_009881345#GT686_RS07825
RROmpRCurrent focus
44 082-44 744 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS06205Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1727197
Simplified PFAM architecture for RROC_1727197
PFAM domain coverage: 180 / 220 aa (81.8%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[146-218]
- Domain count: 2
- Matched identifier: RROC_1727197
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 146-218 ; Trans_reg_C 146-218
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS06205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881345
AssemblyASM988134v1 · Scaffoldhaploid
Genome composition4 246 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 137 · HK 66 · RR 69CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key