1 SBP_bac_3#1
49-253 aa · 205 aa · 21.7% of protein
Raw token
SBP_bac_3:49:4.44e-33:253:215:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT686_RS06565
Histidine kinase, Hybrid
Blautia wexlerae · GCF_009881345
ClassHKTypeHybridLength943 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881345#GT686_RS06565Stable P2CS identifier used across views.
GenomeGCF_009881345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length943 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage706 / 943 aa (74.9%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa943 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
287-485 aa · 199 aa · 21.1% of protein
Raw token
SBP_bac_3:287:0.00000000115:485:215:2243 HisKA#3
566-631 aa · 66 aa · 7.0% of protein
Raw token
HisKA:566:5.37e-19:631:66:644 HATPase_c#4
679-796 aa · 118 aa · 12.5% of protein
Raw token
HATPase_c:679:1.02e-28:796:119:1095 Response_reg#5
819-936 aa · 118 aa · 12.5% of protein
Raw token
Response_reg:819:5.41e-30:936:118:111- Raw architecture: SBP_bac_3:49:4.44e-33:253:215:224#SBP_bac_3:287:0.00000000115:485:215:224#HisKA:566:5.37e-19:631:66:64#HATPase_c:679:1.02e-28:796:119:109#Response_reg:819:5.41e-30:936:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881345::NZ_WWVC01000009.1::G00084
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span25814-31583Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT686_06555RefSeq proteinWP_161276621.1
Context group ID
GCF_009881345::NZ_WWVC01000009.1::G00084Context members
GT686_RS06565GT686_RS06570
Partner locus tags
GT686_RS06565GT686_RS06570
Partner old locus tags
GT686_06555GT686_06560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161276621.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8XWP2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8XWP2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT686_RS06565Primary locus identifier stored in the genes table.
Old locus tagGT686_06555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVC01000009.1Sequence record reported by the local genomic context database.
Genomic interval25 814-28 645 nt2 832 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 814-31 583 ntGCF_009881345::NZ_WWVC01000009.1::G00084
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881345::NZ_WWVC01000009.1::G00084Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVC01000009.1All displayed genes belong to this local TCS context.
Neighborhood span25 814-31 583 nt5 770 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 814 nt31 583 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT686_RS06565GCF_009881345#GT686_RS06565
HKHybridCurrent focus
25 814-28 645 nt · Reverse (-)
GT686_RS06570GCF_009881345#GT686_RS06570
HKHybrid
28 716-31 583 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009881235#GT685_RS15115Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0337259
Simplified PFAM architecture for HKOC_0337259
PFAM domain coverage: 494 / 943 aa (52.4%)
1 aa943 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[49-241] | HisKA[566-631] | HATPase_c[679-795] | Response_reg[819-936]
- Domain count: 4
- Matched identifier: HKOC_0337259
- Positioned domains: SBP_bac_3 49-241 ; HisKA 566-631 ; HATPase_c 679-795 ; Response_reg 819-936
Cluster members and taxonomy
Representative gene: GCF_009881235#GT685_RS15115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881345
AssemblyASM988134v1 · Scaffoldhaploid
Genome composition4 246 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 137 · HK 66 · RR 69CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key