Gene detail

GT686_RS04575

Response regulator, unclassified

Blautia wexlerae · GCF_009881345

Open genome Open selected cluster RefSeq

ClassRRTypeunclassifiedLength539 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_009881345#GT686_RS04575Stable P2CS identifier used across views.

GenomeGCF_009881345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia

Selected clusterRROC_0092353Run 7 · 3 sequences · id 100% · cov 80% · representative

External referencesWP_161280774.1 · MIST4 GT686_RS04575RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

Response_regHTH_AraC

Protein length539 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage154 / 539 aa (28.6%)Merged over positioned domains only.

Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa539 aa

Domain-by-domain annotation2 items

1 Response_reg#1

4-117 aa · 114 aa · 21.2% of protein

Raw tokenResponse_reg:4:1.19e-26:117:114:111

2 HTH_AraC#2

443-482 aa · 40 aa · 7.4% of protein

Raw tokenHTH_AraC:443:0.0000226:482:40:42

Raw architecture: Response_reg:4:1.19e-26:117:114:111#HTH_AraC:443:0.0000226:482:40:42
Domain description: 1 Response_reg,1 HTH_AraC
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_009881345::NZ_WWVC01000005.1::G00075

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span84899-88320Genomic interval covered by the local TCS group.

Identifiers

Old locus tagGT686_04570RefSeq proteinWP_161280774.1

Context group IDGCF_009881345::NZ_WWVC01000005.1::G00075

Context members

GT686_RS04570GT686_RS04575

Partner locus tags

GT686_RS04570GT686_RS04575

Partner old locus tags

GT686_04565GT686_04570

Partner protein IDs

WP_008705561.1 WP_161280774.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_161280774.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagGT686_RS04575Primary locus identifier stored in the genes table.

Old locus tagGT686_04570Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_WWVC01000005.1Sequence record reported by the local genomic context database.

Genomic interval86 701-88 320 nt1 620 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span84 899-88 320 ntGCF_009881345::NZ_WWVC01000005.1::G00075

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_009881345::NZ_WWVC01000005.1::G00075

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_WWVC01000005.1All displayed genes belong to this local TCS context.

Neighborhood span84 899-88 320 nt3 422 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

84 899 nt88 320 nt

+-GT686_RS04570 GT686_RS04575

Neighborhood gene cards

2 genes in the current local neighborhood.

GT686_RS04570GCF_009881345#GT686_RS04570

HKClassic

84 899-86 704 nt · Reverse (-)

Old locus GT686_04565RefSeq WP_008705561.1

Open gene

GT686_RS04575GCF_009881345#GT686_RS04575

RRunclassifiedCurrent focus

86 701-88 320 nt · Reverse (-)

Old locus GT686_04570RefSeq WP_161280774.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

RROC_0092353RR

Run 73 sequencesid 100%cov 80%

PFAM Response_reg + GGDEF_2 + HTH_18

Current gene is the representative sequence.

Selected clusterRROC_0092353Run 7 · RR · 3 sequences

Representative sequenceGCF_009881345#GT686_RS04575The current gene is the representative for this cluster.

PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for RROC_0092353

Simplified PFAM architecture for RROC_0092353

PFAM domain coverage: 318 / 539 aa (59.0%)

1 aa539 aa

Response_regGGDEF_2HTH_18

Simplified architecture: Response_reg + GGDEF_2 + HTH_18
Raw architecture: Response_reg[4-116] | GGDEF_2[173-299] | HTH_18[458-535]
Domain count: 3
Matched identifier: RROC_0092353
Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 173-299 ; GGDEF_2 173-299 ; HTH_18 458-535 ; HTH_18 458-535

Cluster members and taxonomy

Representative gene: GCF_009881345#GT686_RS04575

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881345

AssemblyASM988134v1 · Scaffoldhaploid

Genome composition4 246 860 bp · 41,0% GCBlautia wexlerae

Signal transduction countsGenes 137 · HK 66 · RR 69CheA 0 · PP 2

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia

Open genome Search genes in genome Search RR genes NCBI assembly files

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