1 dCache_1#1
48-289 aa · 242 aa · 40.3% of protein
Raw token
dCache_1:48:7.77e-19:289:246:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT686_RS04570
Histidine kinase, Classic
Blautia wexlerae · GCF_009881345
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881345#GT686_RS04570Stable P2CS identifier used across views.
GenomeGCF_009881345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage496 / 601 aa (82.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation4 items
2 HAMP#2
308-377 aa · 70 aa · 11.6% of protein
Raw token
HAMP:308:0.0000000000000018:377:70:693 His_kinase#3
393-471 aa · 79 aa · 13.1% of protein
Raw token
His_kinase:393:6.36e-37:471:79:804 HATPase_c#4
487-591 aa · 105 aa · 17.5% of protein
Raw token
HATPase_c:487:0.000000000000014:591:109:109- Raw architecture: dCache_1:48:7.77e-19:289:246:195#HAMP:308:0.0000000000000018:377:70:69#His_kinase:393:6.36e-37:471:79:80#HATPase_c:487:0.000000000000014:591:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881345::NZ_WWVC01000005.1::G00075
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84899-88320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT686_04565RefSeq proteinWP_008705561.1
Context group ID
GCF_009881345::NZ_WWVC01000005.1::G00075Context members
GT686_RS04570GT686_RS04575
Partner locus tags
GT686_RS04570GT686_RS04575
Partner old locus tags
GT686_04565GT686_04570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008705561.1Primary protein accession used for annex mappings.
UniProt accessionA0A174NC01Primary UniProt accession resolved in the annex database.
UniProt IDA0A174NC01_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT686_RS04570Primary locus identifier stored in the genes table.
Old locus tagGT686_04565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVC01000005.1Sequence record reported by the local genomic context database.
Genomic interval84 899-86 704 nt1 806 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span84 899-88 320 ntGCF_009881345::NZ_WWVC01000005.1::G00075
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881345::NZ_WWVC01000005.1::G00075Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVC01000005.1All displayed genes belong to this local TCS context.
Neighborhood span84 899-88 320 nt3 422 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 899 nt88 320 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT686_RS04570GCF_009881345#GT686_RS04570
HKClassicCurrent focus
84 899-86 704 nt · Reverse (-)
GT686_RS04575GCF_009881345#GT686_RS04575
RRunclassified
86 701-88 320 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0117155Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1047717
Simplified PFAM architecture for HKOC_1047717
PFAM domain coverage: 479 / 601 aa (79.7%)
1 aa601 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[49-289] | HAMP[324-377] | His_kinase[393-471] | HATPase_c[487-591]
- Domain count: 4
- Matched identifier: HKOC_1047717
- Positioned domains: dCache_1 49-289 ; HAMP 324-377 ; His_kinase 393-471 ; HATPase_c 487-591
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0117155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881345
AssemblyASM988134v1 · Scaffoldhaploid
Genome composition4 246 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 137 · HK 66 · RR 69CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key