1 CHASE#1
110-218 aa · 109 aa · 15.9% of protein
Raw token
CHASE:110:0.0000000000000124:218:118:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT686_RS01935
Histidine kinase, Hybrid
Blautia wexlerae · GCF_009881345
ClassHKTypeHybridLength686 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881345#GT686_RS01935Stable P2CS identifier used across views.
GenomeGCF_009881345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_cResponse_reg
Protein length686 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage408 / 686 aa (59.5%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa686 aa
Domain-by-domain annotation4 items
2 HisKA#2
309-375 aa · 67 aa · 9.8% of protein
Raw token
HisKA:309:3.31e-17:375:67:643 HATPase_c#3
422-539 aa · 118 aa · 17.2% of protein
Raw token
HATPase_c:422:9.99e-31:539:118:1094 Response_reg#4
565-678 aa · 114 aa · 16.6% of protein
Raw token
Response_reg:565:3.03e-28:678:114:111- Raw architecture: CHASE:110:0.0000000000000124:218:118:183#HisKA:309:3.31e-17:375:67:64#HATPase_c:422:9.99e-31:539:118:109#Response_reg:565:3.03e-28:678:114:111
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881345::NZ_WWVC01000002.1::G00048
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span9714-14474Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT686_01935RefSeq proteinWP_008704205.1
Context group ID
GCF_009881345::NZ_WWVC01000002.1::G00048Context members
GT686_RS01930GT686_RS01935
Partner locus tags
GT686_RS01930GT686_RS01935
Partner old locus tags
GT686_01930GT686_01935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008704205.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8XUF7Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8XUF7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT686_RS01935Primary locus identifier stored in the genes table.
Old locus tagGT686_01935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVC01000002.1Sequence record reported by the local genomic context database.
Genomic interval12 414-14 474 nt2 061 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 714-14 474 ntGCF_009881345::NZ_WWVC01000002.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881345::NZ_WWVC01000002.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVC01000002.1All displayed genes belong to this local TCS context.
Neighborhood span9 714-14 474 nt4 761 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 714 nt14 474 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT686_RS01930GCF_009881345#GT686_RS01930
HKHybrid
9 714-12 377 nt · Forward (+)
GT686_RS01935GCF_009881345#GT686_RS01935
HKHybridCurrent focus
12 414-14 474 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009881235#GT685_RS04135Use this link to inspect the representative gene detail.
PFAM architectureCHASE + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0801762
Simplified PFAM architecture for HKOC_0801762
PFAM domain coverage: 401 / 686 aa (58.5%)
1 aa686 aa
CHASEHisKAHATPase_cResponse_reg
- Simplified architecture: CHASE + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE[109-213] | HisKA[309-375] | HATPase_c[422-536] | Response_reg[565-678]
- Domain count: 4
- Matched identifier: HKOC_0801762
- Positioned domains: CHASE 109-213 ; HisKA 309-375 ; HATPase_c 422-536 ; Response_reg 565-678
Cluster members and taxonomy
Representative gene: GCF_009881235#GT685_RS04135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881345
AssemblyASM988134v1 · Scaffoldhaploid
Genome composition4 246 860 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 137 · HK 66 · RR 69CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key