1 HisKA#1
146-213 aa · 68 aa · 18.5% of protein
Raw token
HisKA:146:0.00000000000689:213:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS04820
Histidine kinase, Classic
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881245#GT637_RS04820Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 368 aa (48.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
258-366 aa · 109 aa · 29.6% of protein
Raw token
HATPase_c:258:3.47e-29:366:110:109- Raw architecture: HisKA:146:0.00000000000689:213:68:64#HATPase_c:258:3.47e-29:366:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881245::NZ_WWUX01000018.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12545-14347Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_04825RefSeq proteinWP_161220278.1
Context group ID
GCF_009881245::NZ_WWUX01000018.1::G00015Context members
GT637_RS04820GT637_RS04825
Partner locus tags
GT637_RS04820GT637_RS04825
Partner old locus tags
GT637_04825GT637_04830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161220278.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS04820Primary locus identifier stored in the genes table.
Old locus tagGT637_04825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000018.1Sequence record reported by the local genomic context database.
Genomic interval12 545-13 651 nt1 107 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 545-14 347 ntGCF_009881245::NZ_WWUX01000018.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000018.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000018.1All displayed genes belong to this local TCS context.
Neighborhood span12 545-14 347 nt1 803 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 545 nt14 347 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT637_RS04820GCF_009881245#GT637_RS04820
HKClassicCurrent focus
12 545-13 651 nt · Reverse (-)
GT637_RS04825GCF_009881245#GT637_RS04825
RROmpR
13 664-14 347 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS04805Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2699905
Simplified PFAM architecture for HKOC_2699905
PFAM domain coverage: 176 / 368 aa (47.8%)
1 aa368 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[147-212] | HATPase_c[258-367]
- Domain count: 2
- Matched identifier: HKOC_2699905
- Positioned domains: HisKA 147-212 ; HATPase_c 258-367
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS04805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key