1 Response_reg#1
4-120 aa · 117 aa · 47.8% of protein
Raw token
Response_reg:4:1.73e-20:120:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT685_RS07235
Response regulator LytTR family
Blautia wexlerae · GCF_009881235
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009881235#GT685_RS07235Stable P2CS identifier used across views.
GenomeGCF_009881235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 245 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
144-226 aa · 83 aa · 33.9% of protein
Raw token
LytTR:144:5.17e-17:226:92:98- Raw architecture: Response_reg:4:1.73e-20:120:119:111#LytTR:144:5.17e-17:226:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009881235::NZ_WWUZ01000011.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span31234-31971Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT685_07275RefSeq proteinWP_022380556.1
Context group ID
GCF_009881235::NZ_WWUZ01000011.1::G00003Context members
GT685_RS07235
Partner locus tags
GT685_RS07235
Partner old locus tags
GT685_07275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022380556.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8XTP7Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8XTP7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT685_RS07235Primary locus identifier stored in the genes table.
Old locus tagGT685_07275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUZ01000011.1Sequence record reported by the local genomic context database.
Genomic interval31 234-31 971 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 234-31 971 ntGCF_009881235::NZ_WWUZ01000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881235::NZ_WWUZ01000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUZ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span31 234-31 971 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 234 nt31 971 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT685_RS07235GCF_009881235#GT685_RS07235
RRLytTRCurrent focus
31 234-31 971 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009881235#GT685_RS07235The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0795081
Simplified PFAM architecture for RROC_0795081
PFAM domain coverage: 179 / 245 aa (73.1%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[144-206]
- Domain count: 2
- Matched identifier: RROC_0795081
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 144-206 ; LytTR 144-206
Cluster members and taxonomy
Representative gene: GCF_009881235#GT685_RS07235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881235
AssemblyASM988123v1 · Scaffoldhaploid
Genome composition4 251 753 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 140 · HK 66 · RR 72CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key