1 HisKA#1
123-180 aa · 58 aa · 18.2% of protein
Raw token
HisKA:123:0.000000885:180:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT685_RS06425
Histidine kinase, Classic
Blautia wexlerae · GCF_009881235
ClassHKTypeClassicLength319 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881235#GT685_RS06425Stable P2CS identifier used across views.
GenomeGCF_009881235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length319 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 319 aa (49.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa319 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
217-317 aa · 101 aa · 31.7% of protein
Raw token
HATPase_c:217:1.34e-27:317:101:109- Raw architecture: HisKA:123:0.000000885:180:58:64#HATPase_c:217:1.34e-27:317:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881235::NZ_WWUZ01000009.1::G00086
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67000-68648Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT685_06465RefSeq proteinWP_161276036.1
Context group ID
GCF_009881235::NZ_WWUZ01000009.1::G00086Context members
GT685_RS06425GT685_RS06430
Partner locus tags
GT685_RS06425GT685_RS06430
Partner old locus tags
GT685_06465GT685_06470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161276036.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8XRD9Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8XRD9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT685_RS06425Primary locus identifier stored in the genes table.
Old locus tagGT685_06465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUZ01000009.1Sequence record reported by the local genomic context database.
Genomic interval67 000-67 959 nt960 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 000-68 648 ntGCF_009881235::NZ_WWUZ01000009.1::G00086
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881235::NZ_WWUZ01000009.1::G00086Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUZ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span67 000-68 648 nt1 649 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 000 nt68 648 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT685_RS06425GCF_009881235#GT685_RS06425
HKClassicCurrent focus
67 000-67 959 nt · Reverse (-)
GT685_RS06430GCF_009881235#GT685_RS06430
RROmpR
67 956-68 648 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009881235#GT685_RS06425The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2869467
Simplified PFAM architecture for HKOC_2869467
PFAM domain coverage: 165 / 319 aa (51.7%)
1 aa319 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-180] | HATPase_c[211-318]
- Domain count: 2
- Matched identifier: HKOC_2869467
- Positioned domains: HisKA 124-180 ; HATPase_c 211-318
Cluster members and taxonomy
Representative gene: GCF_009881235#GT685_RS06425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881235
AssemblyASM988123v1 · Scaffoldhaploid
Genome composition4 251 753 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 140 · HK 66 · RR 72CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key