1 dCache_1#1
135-288 aa · 154 aa · 25.5% of protein
Raw token
dCache_1:135:0.000000000114:288:164:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT728_RS16630
Histidine kinase, Classic
Blautia wexlerae · GCF_009876865
ClassHKTypeClassicLength603 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009876865#GT728_RS16630Stable P2CS identifier used across views.
GenomeGCF_009876865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length603 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage415 / 603 aa (68.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa603 aa
Domain-by-domain annotation4 items
2 HAMP#2
308-376 aa · 69 aa · 11.4% of protein
Raw token
HAMP:308:0.0000000000388:376:70:693 His_kinase#3
391-470 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:391:9.32e-25:470:80:804 HATPase_c#4
487-598 aa · 112 aa · 18.6% of protein
Raw token
HATPase_c:487:0.0000000000262:598:112:109- Raw architecture: dCache_1:135:0.000000000114:288:164:195#HAMP:308:0.0000000000388:376:70:69#His_kinase:391:9.32e-25:470:80:80#HATPase_c:487:0.0000000000262:598:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009876865::NZ_WWVQ01000052.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15100-18481Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT728_16655RefSeq proteinWP_161234124.1
Context group ID
GCF_009876865::NZ_WWVQ01000052.1::G00050Context members
GT728_RS16625GT728_RS16630
Partner locus tags
GT728_RS16625GT728_RS16630
Partner old locus tags
GT728_16650GT728_16655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161234124.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8T7J9Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8T7J9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT728_RS16630Primary locus identifier stored in the genes table.
Old locus tagGT728_16655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVQ01000052.1Sequence record reported by the local genomic context database.
Genomic interval16 670-18 481 nt1 812 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 100-18 481 ntGCF_009876865::NZ_WWVQ01000052.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009876865::NZ_WWVQ01000052.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVQ01000052.1All displayed genes belong to this local TCS context.
Neighborhood span15 100-18 481 nt3 382 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 100 nt18 481 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT728_RS16625GCF_009876865#GT728_RS16625
RRunclassified
15 100-16 668 nt · Reverse (-)
GT728_RS16630GCF_009876865#GT728_RS16630
HKClassicCurrent focus
16 670-18 481 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009876865#GT728_RS16630The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1038809
Simplified PFAM architecture for HKOC_1038809
PFAM domain coverage: 474 / 603 aa (78.6%)
1 aa603 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[57-288] | HAMP[326-375] | His_kinase[391-470] | HATPase_c[487-598]
- Domain count: 4
- Matched identifier: HKOC_1038809
- Positioned domains: dCache_1 57-288 ; HAMP 326-375 ; His_kinase 391-470 ; HATPase_c 487-598
Cluster members and taxonomy
Representative gene: GCF_009876865#GT728_RS16630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009876865
AssemblyASM987686v1 · Scaffoldhaploid
Genome composition4 659 554 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 61 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key