1 Response_reg#1
3-115 aa · 113 aa · 21.0% of protein
Raw token
Response_reg:3:8.84e-28:115:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT728_RS05565
Response regulator, unclassified
Blautia wexlerae · GCF_009876865
ClassRRTypeunclassifiedLength539 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009876865#GT728_RS05565Stable P2CS identifier used across views.
GenomeGCF_009876865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length539 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 539 aa (36.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa539 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
445-486 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:445:0.00000212:486:42:423 HTH_AraC#3
498-536 aa · 39 aa · 7.2% of protein
Raw token
HTH_AraC:498:0.00000000756:536:39:42- Raw architecture: Response_reg:3:8.84e-28:115:115:111#HTH_AraC:445:0.00000212:486:42:42#HTH_AraC:498:0.00000000756:536:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009876865::NZ_WWVQ01000009.1::G00074
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119853-122531Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT728_05560RefSeq proteinWP_118614556.1
Context group ID
GCF_009876865::NZ_WWVQ01000009.1::G00074Context members
GT728_RS05565GT728_RS05570
Partner locus tags
GT728_RS05565GT728_RS05570
Partner old locus tags
GT728_05560GT728_05565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118614556.1Primary protein accession used for annex mappings.
UniProt accessionA0A564WN58Primary UniProt accession resolved in the annex database.
UniProt IDA0A564WN58_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT728_RS05565Primary locus identifier stored in the genes table.
Old locus tagGT728_05560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVQ01000009.1Sequence record reported by the local genomic context database.
Genomic interval119 853-121 472 nt1 620 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 853-122 531 ntGCF_009876865::NZ_WWVQ01000009.1::G00074
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009876865::NZ_WWVQ01000009.1::G00074Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVQ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span119 853-122 531 nt2 679 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 853 nt122 531 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT728_RS05565GCF_009876865#GT728_RS05565
RRunclassifiedCurrent focus
119 853-121 472 nt · Forward (+)
GT728_RS05570GCF_009876865#GT728_RS05570
HKClassic
121 497-122 531 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009876865#GT728_RS05565The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0092351
Simplified PFAM architecture for RROC_0092351
PFAM domain coverage: 316 / 539 aa (58.6%)
1 aa539 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[3-114] | GGDEF_2[174-299] | HTH_18[459-536]
- Domain count: 3
- Matched identifier: RROC_0092351
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; GGDEF_2 174-299 ; GGDEF_2 174-299 ; HTH_18 459-536 ; HTH_18 459-536
Cluster members and taxonomy
Representative gene: GCF_009876865#GT728_RS05565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009876865
AssemblyASM987686v1 · Scaffoldhaploid
Genome composition4 659 554 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 61 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key