1 HAMP#1
139-204 aa · 66 aa · 15.0% of protein
Raw token
HAMP:139:0.00000014:204:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT575_RS08960
Histidine kinase, Classic
Coprococcus sp. BIOML-A2 · GCF_009875795
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875795#GT575_RS08960Stable P2CS identifier used across views.
GenomeGCF_009875795Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 440 aa (53.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
219-288 aa · 70 aa · 15.9% of protein
Raw token
HisKA:219:0.00000000147:288:70:643 HATPase_c#3
336-435 aa · 100 aa · 22.7% of protein
Raw token
HATPase_c:336:2.99e-23:435:101:109- Raw architecture: HAMP:139:0.00000014:204:66:69#HisKA:219:0.00000000147:288:70:64#HATPase_c:336:2.99e-23:435:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875795::NZ_WWSI01000003.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span463545-465529Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT575_09020RefSeq proteinWP_117875051.1
Context group ID
GCF_009875795::NZ_WWSI01000003.1::G00028Context members
GT575_RS08955GT575_RS08960
Partner locus tags
GT575_RS08955GT575_RS08960
Partner old locus tags
GT575_09015GT575_09020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117875051.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT575_RS08960Primary locus identifier stored in the genes table.
Old locus tagGT575_09020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSI01000003.1Sequence record reported by the local genomic context database.
Genomic interval464 207-465 529 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span463 545-465 529 ntGCF_009875795::NZ_WWSI01000003.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875795::NZ_WWSI01000003.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSI01000003.1All displayed genes belong to this local TCS context.
Neighborhood span463 545-465 529 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
463 545 nt465 529 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT575_RS08955GCF_009875795#GT575_RS08955
RROmpR
463 545-464 219 nt · Forward (+)
GT575_RS08960GCF_009875795#GT575_RS08960
HKClassicCurrent focus
464 207-465 529 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003461545#DWW60_RS08595Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2074121
Simplified PFAM architecture for HKOC_2074121
PFAM domain coverage: 216 / 440 aa (49.1%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[159-204] | HisKA[220-287] | HATPase_c[335-436]
- Domain count: 3
- Matched identifier: HKOC_2074121
- Positioned domains: HAMP 159-204 ; HisKA 220-287 ; HATPase_c 335-436
Cluster members and taxonomy
Representative gene: GCF_003461545#DWW60_RS08595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 636 · GCF_009875795
AssemblyASM987579v1 · Contighaploid
Genome composition3 234 243 bp · 44,5% GCCoprococcus sp. BIOML-A2
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key