1 HisKA#1
800-854 aa · 55 aa · 3.8% of protein
Raw token
HisKA:800:0.0000417:854:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT575_RS08475
Histidine kinase, Unorthodox
Coprococcus sp. BIOML-A2 · GCF_009875795
ClassHKTypeUnorthodoxLength1436 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009875795#GT575_RS08475Stable P2CS identifier used across views.
GenomeGCF_009875795Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHpt
Protein length1436 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage344 / 1436 aa (24.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1436 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
968-1063 aa · 96 aa · 6.7% of protein
Raw token
HATPase_c:968:0.00000000000101:1063:101:1093 Response_reg#3
1098-1212 aa · 115 aa · 8.0% of protein
Raw token
Response_reg:1098:3.03e-25:1212:115:1114 Hpt#4
1266-1343 aa · 78 aa · 5.4% of protein
Raw token
Hpt:1266:0.0000000481:1343:79:84- Raw architecture: HisKA:800:0.0000417:854:56:64#HATPase_c:968:0.00000000000101:1063:101:109#Response_reg:1098:3.03e-25:1212:115:111#Hpt:1266:0.0000000481:1343:79:84
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009875795::NZ_WWSI01000003.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span344451-348761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT575_08535RefSeq proteinWP_022216892.1
Context group ID
GCF_009875795::NZ_WWSI01000003.1::G00027Context members
GT575_RS08475
Partner locus tags
GT575_RS08475
Partner old locus tags
GT575_08535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022216892.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1IAP5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1IAP5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT575_RS08475Primary locus identifier stored in the genes table.
Old locus tagGT575_08535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSI01000003.1Sequence record reported by the local genomic context database.
Genomic interval344 451-348 761 nt4 311 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span344 451-348 761 ntGCF_009875795::NZ_WWSI01000003.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875795::NZ_WWSI01000003.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSI01000003.1All displayed genes belong to this local TCS context.
Neighborhood span344 451-348 761 nt4 311 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
344 451 nt348 761 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT575_RS08475GCF_009875795#GT575_RS08475
HKUnorthodoxCurrent focus
344 451-348 761 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481085#DXD11_RS10170Use this link to inspect the representative gene detail.
PFAM architectureReg_prop + Y_Y_Y + HATPase_c + Response_reg + Hpt5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0058030
Simplified PFAM architecture for HKOC_0058030
PFAM domain coverage: 339 / 1436 aa (23.6%)
1 aa1436 aa
Reg_propY_Y_YHATPase_cResponse_regHpt
- Simplified architecture: Reg_prop + Y_Y_Y + HATPase_c + Response_reg + Hpt
- Raw architecture: Reg_prop[379-400] | Y_Y_Y[677-730] | HATPase_c[988-1064] | Response_reg[1098-1210] | Hpt[1267-1339]
- Domain count: 5
- Matched identifier: HKOC_0058030
- Positioned domains: Reg_prop 379-400 ; Y_Y_Y 677-730 ; HATPase_c 988-1064 ; Response_reg 1098-1210 ; Hpt 1267-1339
Cluster members and taxonomy
Representative gene: GCF_003481085#DXD11_RS10170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 636 · GCF_009875795
AssemblyASM987579v1 · Contighaploid
Genome composition3 234 243 bp · 44,5% GCCoprococcus sp. BIOML-A2
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key