1 Response_reg#1
3-103 aa · 101 aa · 46.5% of protein
Raw token
Response_reg:3:9.84e-27:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT575_RS05210
Response regulator NarL family
Coprococcus sp. BIOML-A2 · GCF_009875795
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875795#GT575_RS05210Stable P2CS identifier used across views.
GenomeGCF_009875795Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 217 aa (71.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
157-210 aa · 54 aa · 24.9% of protein
Raw token
HTH_LUXR:157:8.87e-21:210:54:58- Raw architecture: Response_reg:3:9.84e-27:103:101:111#HTH_LUXR:157:8.87e-21:210:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875795::NZ_WWSI01000002.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span213853-215717Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT575_05245RefSeq proteinWP_161171675.1
Context group ID
GCF_009875795::NZ_WWSI01000002.1::G00019Context members
GT575_RS05210GT575_RS05215
Partner locus tags
GT575_RS05210GT575_RS05215
Partner old locus tags
GT575_05245GT575_05250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161171675.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT575_RS05210Primary locus identifier stored in the genes table.
Old locus tagGT575_05245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSI01000002.1Sequence record reported by the local genomic context database.
Genomic interval213 853-214 506 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span213 853-215 717 ntGCF_009875795::NZ_WWSI01000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875795::NZ_WWSI01000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span213 853-215 717 nt1 865 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
213 853 nt215 717 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT575_RS05210GCF_009875795#GT575_RS05210
RRNarLCurrent focus
213 853-214 506 nt · Reverse (-)
GT575_RS05215GCF_009875795#GT575_RS05215
HKClassic
214 560-215 717 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875795#GT575_RS05210The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1857276
Simplified PFAM architecture for RROC_1857276
PFAM domain coverage: 159 / 217 aa (73.3%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[157-210]
- Domain count: 2
- Matched identifier: RROC_1857276
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 157-210 ; GerE 157-210
Cluster members and taxonomy
Representative gene: GCF_009875795#GT575_RS05210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 636 · GCF_009875795
AssemblyASM987579v1 · Contighaploid
Genome composition3 234 243 bp · 44,5% GCCoprococcus sp. BIOML-A2
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key