1 HAMP#1
89-159 aa · 71 aa · 18.7% of protein
Raw token
HAMP:89:0.000000000967:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT575_RS04495
Histidine kinase, Classic
Coprococcus sp. BIOML-A2 · GCF_009875795
ClassHKTypeClassicLength380 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875795#GT575_RS04495Stable P2CS identifier used across views.
GenomeGCF_009875795Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 380 aa (65.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa380 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.6% of protein
Raw token
HisKA:164:0.000000000229:230:67:643 HATPase_c#3
272-380 aa · 109 aa · 28.7% of protein
Raw token
HATPase_c:272:5.75e-32:380:109:109- Raw architecture: HAMP:89:0.000000000967:159:71:69#HisKA:164:0.000000000229:230:67:64#HATPase_c:272:5.75e-32:380:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875795::NZ_WWSI01000002.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101535-103312Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT575_04530RefSeq proteinWP_015533238.1
Context group ID
GCF_009875795::NZ_WWSI01000002.1::G00018Context members
GT575_RS04490GT575_RS04495
Partner locus tags
GT575_RS04490GT575_RS04495
Partner old locus tags
GT575_04525GT575_04530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015533238.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1I7X1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1I7X1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT575_RS04495Primary locus identifier stored in the genes table.
Old locus tagGT575_04530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSI01000002.1Sequence record reported by the local genomic context database.
Genomic interval102 170-103 312 nt1 143 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span101 535-103 312 ntGCF_009875795::NZ_WWSI01000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875795::NZ_WWSI01000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span101 535-103 312 nt1 778 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 535 nt103 312 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT575_RS04490GCF_009875795#GT575_RS04490
RROmpR
101 535-102 173 nt · Forward (+)
GT575_RS04495GCF_009875795#GT575_RS04495
HKClassicCurrent focus
102 170-103 312 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210595#CCU_RS01035Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2610373
Simplified PFAM architecture for HKOC_2610373
PFAM domain coverage: 172 / 380 aa (45.3%)
1 aa380 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[164-229] | HATPase_c[275-380]
- Domain count: 2
- Matched identifier: HKOC_2610373
- Positioned domains: HisKA 164-229 ; HATPase_c 275-380
Cluster members and taxonomy
Representative gene: GCF_000210595#CCU_RS01035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 636 · GCF_009875795
AssemblyASM987579v1 · Contighaploid
Genome composition3 234 243 bp · 44,5% GCCoprococcus sp. BIOML-A2
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key