1 Response_reg#1
4-118 aa · 115 aa · 46.6% of protein
Raw token
Response_reg:4:5.46e-19:118:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT575_RS03385
Response regulator LytTR family
Coprococcus sp. BIOML-A2 · GCF_009875795
ClassRRTypeLytTRLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009875795#GT575_RS03385Stable P2CS identifier used across views.
GenomeGCF_009875795Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 247 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-230 aa · 88 aa · 35.6% of protein
Raw token
LytTR:143:1.77e-18:230:92:98- Raw architecture: Response_reg:4:5.46e-19:118:117:111#LytTR:143:1.77e-18:230:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009875795::NZ_WWSI01000001.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span762765-763508Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT575_03420RefSeq proteinWP_015534355.1
Context group ID
GCF_009875795::NZ_WWSI01000001.1::G00015Context members
GT575_RS03385
Partner locus tags
GT575_RS03385
Partner old locus tags
GT575_03420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015534355.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1I934Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1I934_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT575_RS03385Primary locus identifier stored in the genes table.
Old locus tagGT575_03420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSI01000001.1Sequence record reported by the local genomic context database.
Genomic interval762 765-763 508 nt744 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span762 765-763 508 ntGCF_009875795::NZ_WWSI01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875795::NZ_WWSI01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span762 765-763 508 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
762 765 nt763 508 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT575_RS03385GCF_009875795#GT575_RS03385
RRLytTRCurrent focus
762 765-763 508 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210595#CCU_RS08775Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0756487
Simplified PFAM architecture for RROC_0756487
PFAM domain coverage: 207 / 247 aa (83.8%)
1 aa247 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-118] | LytTR[143-234]
- Domain count: 2
- Matched identifier: RROC_0756487
- Positioned domains: Response_reg 4-118 ; Response_reg 4-118 ; LytTR 143-234 ; LytTR 143-234
Cluster members and taxonomy
Representative gene: GCF_000210595#CCU_RS08775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 636 · GCF_009875795
AssemblyASM987579v1 · Contighaploid
Genome composition3 234 243 bp · 44,5% GCCoprococcus sp. BIOML-A2
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key