1 HAMP#1
188-256 aa · 69 aa · 13.2% of protein
Raw token
HAMP:188:0.0000000000000601:256:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT575_RS01145
Histidine kinase, Classic
Coprococcus sp. BIOML-A2 · GCF_009875795
ClassHKTypeClassicLength522 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875795#GT575_RS01145Stable P2CS identifier used across views.
GenomeGCF_009875795Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length522 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 522 aa (47.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa522 aa
Domain-by-domain annotation3 items
2 HisKA#2
261-325 aa · 65 aa · 12.5% of protein
Raw token
HisKA:261:0.0000000000000154:325:65:643 HATPase_c#3
372-484 aa · 113 aa · 21.6% of protein
Raw token
HATPase_c:372:2.06e-32:484:113:109- Raw architecture: HAMP:188:0.0000000000000601:256:69:69#HisKA:261:0.0000000000000154:325:65:64#HATPase_c:372:2.06e-32:484:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875795::NZ_WWSI01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span238813-241115Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT575_01160RefSeq proteinWP_243147802.1
Context group ID
GCF_009875795::NZ_WWSI01000001.1::G00007Context members
GT575_RS01140GT575_RS01145
Partner locus tags
GT575_RS01140GT575_RS01145
Partner old locus tags
GT575_01155GT575_01160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243147802.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT575_RS01145Primary locus identifier stored in the genes table.
Old locus tagGT575_01160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSI01000001.1Sequence record reported by the local genomic context database.
Genomic interval239 547-241 115 nt1 569 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span238 813-241 115 ntGCF_009875795::NZ_WWSI01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875795::NZ_WWSI01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span238 813-241 115 nt2 303 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
238 813 nt241 115 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT575_RS01140GCF_009875795#GT575_RS01140
RROmpR
238 813-239 547 nt · Forward (+)
GT575_RS01145GCF_009875795#GT575_RS01145
HKClassicCurrent focus
239 547-241 115 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875795#GT575_RS01145The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1385004
Simplified PFAM architecture for HKOC_1385004
PFAM domain coverage: 227 / 522 aa (43.5%)
1 aa522 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[204-255] | HisKA[261-324] | HATPase_c[373-483]
- Domain count: 3
- Matched identifier: HKOC_1385004
- Positioned domains: HAMP 204-255 ; HisKA 261-324 ; HATPase_c 373-483
Cluster members and taxonomy
Representative gene: GCF_009875795#GT575_RS01145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 636 · GCF_009875795
AssemblyASM987579v1 · Contighaploid
Genome composition3 234 243 bp · 44,5% GCCoprococcus sp. BIOML-A2
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key