1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:1.51e-28:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT593_RS09575
Response regulator OmpR family
Dorea longicatena · GCF_009875695
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875695#GT593_RS09575Stable P2CS identifier used across views.
GenomeGCF_009875695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.0% of protein
Raw token
Trans_reg_C:147:1.05e-22:218:76:77- Raw architecture: Response_reg:5:1.51e-28:114:110:111#Trans_reg_C:147:1.05e-22:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875695::NZ_WWSD01000011.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96358-97927Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT593_09595RefSeq proteinWP_117489490.1
Context group ID
GCF_009875695::NZ_WWSD01000011.1::G00002Context members
GT593_RS09570GT593_RS09575
Partner locus tags
GT593_RS09570GT593_RS09575
Partner old locus tags
GT593_09590GT593_09595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117489490.1Primary protein accession used for annex mappings.
UniProt accessionA0A413Z4V6Primary UniProt accession resolved in the annex database.
UniProt IDA0A413Z4V6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT593_RS09575Primary locus identifier stored in the genes table.
Old locus tagGT593_09595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSD01000011.1Sequence record reported by the local genomic context database.
Genomic interval97 250-97 927 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span96 358-97 927 ntGCF_009875695::NZ_WWSD01000011.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875695::NZ_WWSD01000011.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSD01000011.1All displayed genes belong to this local TCS context.
Neighborhood span96 358-97 927 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 358 nt97 927 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT593_RS09570GCF_009875695#GT593_RS09570
HKClassic
96 358-97 257 nt · Reverse (-)
GT593_RS09575GCF_009875695#GT593_RS09575
RROmpRCurrent focus
97 250-97 927 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467725#DW856_RS11075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1479947
Simplified PFAM architecture for RROC_1479947
PFAM domain coverage: 181 / 225 aa (80.4%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1479947
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_003467725#DW856_RS11075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875695
AssemblyASM987569v1 · Scaffoldhaploid
Genome composition3 122 554 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key